CASC Publications | Computing

CASC's research projects nearly always lead to publications in key journals and conference proceedings, often with collaborators from other national labs, academia, and industry. We invite you to explore the past few years of papers to learn more about our recent work.

Hurricane, O.A., Allen, A., Bachmann, B.L. and 67 more (Milovich, J., …) (2025). Present Understanding of Ignition and Gain Using Indirect-Drive Inertial Confinement Fusion Target Designs on the U.S. National Ignition Facility. Plasma Physics and Controlled Fusion, 67(1). 10.1088/1361-6587/ad994f

de Franca, F.O., Virgolin, M., Kommenda, M. and 21 more (Lee, C.S., ...) (2025). SRBench++: Principled Benchmarking of Symbolic Regression with Domain-Expert Interpretation. IEEE Transactions on Evolutionary Computation, 29(4) 1127–1137. 10.1109/TEVC.2024.3423681

He, X., Tran, A., Bortz, D.M., and Choi, Y. (2025). Physics-Informed Active Learning with Simultaneous Weak-Form Latent Space Dynamics Identification. International Journal for Numerical Methods in Engineering, 126(1). 10.1002/nme.7634

Lindstrom, P., Hittinger, J., Diffenderfer, J. and 3 more (Fox, A., Osei-Kuffour, D., ...) (2025). ZFP: A Compressed Array Representation for Numerical Computations. International Journal of High Performance Computing Applications, 39(1) 104–122. 10.1177/10943420241284023

Witherden, F.D., Vincent, P.E., Trojak, W. and 17 more (Dzanic, T., ...) (2025). PyFR v2.0.3: Towards Industrial Adoption of Scale-Resolving Simulations. Computer Physics Communications, 311. 10.1016/j.cpc.2025.109567

Atallah, N.M., Mittal, K., Scovazzi, G. and Tomov, V.Z. (2025). A High-Order Shifted Interface Method for Lagrangian Shock Hydrodynamics. Journal of Computational Physics, 523. 10.1016/j.jcp.2024.113637

Ahrens, J., Arienti, M., Ayachit, U. and 46 more (Bremer, P.-T., ...) (2025). The ECP ALPINE Project: In Situ and Post Hoc Visualization Infrastructure and Analysis Capabilities for Exascale. International Journal of High Performance Computing Applications, 39(1) 32–51. 10.1177/10943420241286521

Cho, S., Weitzner, S.E., Zagalskaya, A. and 5 more (Hsu, T., ...) (2025). Revisiting a Minimally Destructive Analytic Approach for Determining Electrochemical Kinetic Parameters: Measuring Aluminum Corrosion Across a Wide pH Range Based on the Butler-Volmer Equation. Corrosion Science, 251. 10.1016/j.corsci.2025.112900

Giovannelli, A., Pavanatto, L., Davari, S. and 5 more (Miao, H., Chheang, V., Bremer, T., ...) (2025). Investigating the Influence of Playback Interactivity during Guided Tours for Asynchronous Collaboration in Virtual Reality. Proceedings - 2025 IEEE Conference on Virtual Reality and 3D User Interfaces, VR 2025, 23–33. 10.1109/VR59515.2025.00027

Chang, T., Gillette, A., Maulik, R. (2025). Leveraging Interpolation Models and Error Bounds for Verifiable Scientific Machine Learning. Journal of Computational Physics, 524. 10.1016/j.jcp.2025.113726

Henneking, S., Venkat, S., Dobrev, V. and 5 more (Camier, J., Kolev, T., ...) (2025). Real-Time Bayesian Inference at Extreme Scale: A Digital Twin for Tsunami Early Warning Applied to the Cascadia Subduction Zone. Proceedings of the International Conference for High Performance Computing, Networking, Storage, and Analysis, SC 2025, 60–71. 10.1145/3712285.3771787

Georgakoudis, G., Parasyris, K., Beckingsale, D. (2025). Proteus: Portable Runtime Optimization of GPU Kernel Execution with Just-in-Time Compilation. CGO 2025 - Proceedings of the 23rd ACM/IEEE International Symposium on Code Generation and Optimization, 507–522. 10.1145/3696443.3708939

Buason, P., Misra, S., Watson, J.-P. and 1 more (...) (2025). Adaptive Power Flow Approximations with Second-Order Sensitivity Insights. IEEE Transactions on Power Systems, 40(3) 2648–2660. 10.1109/TPWRS.2024.3499899

Tommasini, R., Casey, D.T., Clark, D. and 28 more (Milovich, J., ...) (2025). High-Compression Implosions Based on High Density Carbon Ablator Using Modified Drive and Capsule Dopant Profiles. Physics of Plasmas, 32(3). 10.1063/5.0226272

Brönner, M., Atzeni, S., Callahan, D. and 8 more (Gaffney, J., ...) (2025). Particle Swarm Optimization of 1D Isochoric Compression Designs for Fast Ignition. Physics of Plasmas, 32(2). 10.1063/5.0244435

Bogale, B., Lumsden, I., Sukkari, D. and 4 more (Brink, S., Pearce, O., ...) (2025). Surrogate Models for Analyzing Performance Behavior of HPC Applications Using the RAJA Performance Suite. Lecture Notes in Computer Science,15906327–335. 10.1007/978-3-031-97635-3_39

Dzanic, T., Martinelli, L. (2025). High-Order Limiting Methods Using Maximum Principle Bounds Derived from the Boltzmann Equation I: Euler Equations. Journal of Computational Physics, 529. 10.1016/j.jcp.2025.113895

Spears, B.K., Brandon, S., Casey, D.T. and 14 more (Gaffney, J.A., …) (2025). Predicting Fusion Ignition at the National Ignition Facility with Physics-Informed Deep Learning. Science, 389(6761) 727–731. 10.1126/science.adm8201

Arran, C., Holec, M., Sherlock, M. and 2 more (...) (2025). The Accuracy of Multi-Group Models for Nonlocal Electron Transport in Magnetized Plasmas. Physics of Plasmas, 32(4). 10.1063/5.0250147

Subramanyam, R., Thopalli, K., Narayanaswamy, V., Thiagarajan, J.J. (2025). DECIDER: Leveraging Foundation Model Priors for Improved Model Failure Detection and Explanation. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 15137465–482. 10.1007/978-3-031-72986-7_27

Eckstein, J., Watson, J.-P., Woodruff, D.L. (2025). Projective Hedging Algorithms for Multistage Stochastic Programming, Supporting Distributed and Asynchronous Implementation. Operations Research, 73(1) 311–324. 10.1287/opre.2022.0228

Tan, B., Zhao, J., Chiang, N. and 1 more (...) (2025). High-Dimension Bayesian Parameter Estimation for WECC Composite Load Model Using Realistic Event Measurements. IEEE Transactions on Power Systems, 40(5) 3979–3992. 10.1109/TPWRS.2025.3543544

Mittal, K., Parik, A., Dutta, S. and 3 more (Kolev, T., ...) (2025). General Field Evaluation in High-Order Meshes on GPUs. Computers and Fluids, 295. 10.1016/j.compfluid.2025.106606

Sochat, V., Milroy, D., Sarkar, A. and 2 more (Marathe, A., Patki, T.) (2025). Usability Evaluation of Cloud for HPC Applications. Proceedings of 2025 Workshops of the International Conference on High Performance Computing, Network, Storage, and Analysis, SC 2025 Workshops, 135–150. 10.1145/3731599.3767353

Cao, S., Brarda, F., Li, R.P. and 1 more (...) (2025). Spectral-Refiner: Accurate Fine-Tuning of Spatiotemporal Fourier Neural Operator for Turbulent Flows. 13th International Conference on Learning Representations, ICLR 2025, 58421–58457.

Balos, C.J., Day, M., Esclapez, L. and 8 more (Gardner, D., Woodward, C.S., ...) (2025). SUNDIALS Time Integrators for Exascale Applications with Many Independent Systems of Ordinary Differential Equations. International Journal of High Performance Computing Applications, 39(1) 123–146. 10.1177/10943420241280060

Xu, T., Li, R.P., Osei-Kuffuor, D. (2025). A Two-Level GPU-Accelerated Incomplete LU Preconditioner for General Sparse Linear Systems. International Journal of High Performance Computing Applications, 39(3) 424–442. 10.1177/10943420251319334

Yi, G.H., Choi, J., Song, H. and 9 more (Buttler, D., ...) (2025). MaTableGPT: GPT-Based Table Data Extractor from Materials Science Literature. Advanced Science, 12(16). 10.1002/advs.202408221

Arthur, R.S., Golaz, J.-C., Lee, H.-H. and 3 more (Watson, J.-P., ...) (2025). High-Resolution Climate Model Datasets for Energy Infrastructure Planning in a Renewable-Dependent Future. Journal of Renewable and Sustainable Energy, 17(3). 10.1063/5.0254086

Choi, H., Mitra, S., Brodksy, J. and 6 more (Liu, S., ...) (2025). Learning Nuclear Cross Sections Across the Chart of Nuclides with Graph Neural Networks. Physical Review C, 112(4) 1–16. 10.1103/4jd4-bnyh

Ma, S., Diffenderfer, J., Kailkhura, B. and 1 more (...) (2025). Deep Learning of PDE Correction and Mesh Adaption Without Automatic Differentiation. Machine Learning, 114(3). 10.1007/s10994-025-06746-9

Piansky, R., Taylor, S., Rhodes, N. and 3 more (Watson, J.-P., ...) (2025). Quantifying Metrics for Wildfire Ignition Risk from Geographic Data in Power Shutoff Decision-Making. Proceedings of the Annual Hawaii International Conference on System Sciences, 3171–3180.

Mohan, K.A., Ferrucci, M., Divin, C. and 2 more (Kim, H., ...) (2025). Distributed Stochastic Optimization of a Neural Representation Network for Time-Space Tomography Reconstruction. IEEE Transactions on Computational Imaging, 11362–376. 10.1109/TCI.2025.3547265

Tekriwal, M., Sottile, M. (2025). Mechanized Semantics for Correctness of the RS274 Additive Manufacturing Command Language. Lecture Notes in Computer Science, 15682341–359. 10.1007/978-3-031-93706-4_20

Miao, H., Narain, S., Chheang, V. and 7 more (Bremer, P.-T., ...) (2025). LatticeAnalytics: Strut-Level Visualization and Inspection of Additively Manufactured Lattice Structures. IEEE Transactions on Visualization and Computer Graphics, 31(10) 9266–9283. 10.1109/TVCG.2025.3593230

Pavanatto, L., Giovannelli, A., Giera, B. and 3 more (Bremer, T., Miao, H., ...) (2025). Exploring Multiscale Navigation of Homogeneous and Dense Objects with Progressive Refinement in Virtual Reality. Proceedings - 2025 IEEE Conference on Virtual Reality and 3D User Interfaces, VR 2025, 228–237. 10.1109/VR59515.2025.00047

Laurel, J., Laguna, I., Hückelheim, J. (2025). Synthesizing Sound and Precise Abstract Transformers for Nonlinear Hyperbolic PDE Solvers. Proceedings of the ACM on Programming Languages, 9(2) 1063–1091. 10.1145/3763088

Ostroski, M., Sanders, G., Steil, T., Pearce, R. (2025). Scalable Edge Clustering of Dynamic Graphs via Weighted Line Graphs. Journal of Complex Networks, 13(3). 10.1093/comnet/cnaf006

Peng, I., Wahlgren, J., Youssef, K. and 3 more (Iwabuchi, K., Pearce, R., Gokhale, M.) (2025). UMap: An Application-Oriented User Level Memory Mapping Library. International Journal of High Performance Computing Applications, 39(2) 269–282. 10.1177/10943420241303145

Luo, D., Kouyoumdjian, A., Strnad, O. and 4 more (Miao, H., ...) (2025). SynopFrame: Multiscale Time-Dependent Visual Abstraction Framework for Analyzing DNA Nanotechnology Simulations (Figure Presented). Computers and Graphics, 132. 10.1016/j.cag.2025.104376

Ziogas, A.N., Schneider, T., Ben-Nun, T. and 5 more (...) (2025). Productivity, Portability, Performance, and Reproducibility: Data-Centric Python. IEEE Transactions on Parallel and Distributed Systems, 36(5) 804–820. 10.1109/TPDS.2025.3549310

Pettit, J.F., Lee, C.S., Yang, J. and 4 more (...) (2025). DisCo-DSO: Coupling Discrete and Continuous Optimization for Efficient Generative Design in Hybrid Spaces. Proceedings of the AAAI Conference on Artificial Intelligence, 39(25) 27117–27125. 10.1609/aaai.v39i25.34919

Singh, A., Verma, N., Kant, S. and 3 more (Bhardwaj, K., ...) (2025). The Effects of Alpha Linolenic Acid (Omega-3 Fatty Acid) on Tobacco Craving Intensity, Withdrawal Symptoms and Biochemical Markers in Tobacco Users. Indian Journal of Clinical Biochemistry, 40(4) 563–575. 10.1007/s12291-024-01226-8

Lee, H.-H., Arthur, R.S., Golaz, J.-C. and 4 more (Watson, J.-P., ...) (2025). Assessment of Climate Change Impacts on Renewable Energy Resources in Western North America. Energies, 18(13). 10.3390/en18133467

Yildirim, I., Devarajan, H., Kougkas, A. and 2 more (Mohror, K., ...) (2025). WisIO: Automated I/O Bottleneck Detection with Multi-Perspective Views for HPC Workflows. Proceedings of the International Conference on Supercomputing, 213821749–763. 10.1145/3721145.3725742

Zheng, H., Sun, J., Wu, S. and 4 more (Kailkhura, B., ...) (2025). Leveraging Hierarchical Feature Sharing for Efficient Dataset Condensation. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics),15082166–182. 10.1007/978-3-031-72691-0_10

Ho, A., Vogman, G.V. (2025). Accelerating High-order Continuum Kinetic Plasma Simulations Using Multiple GPUs. Journal of Computational Physics, 540. 10.1016/j.jcp.2025.114271

Azhar, A., Chakraborty, I., Visser, A. and 3 more (Liu, Y., ...) (2025). Machine Learning Prediction of Tritium-Helium Groundwater Ages in the Central Valley, California, USA. Water Resources Research, 61(1). 10.1029/2024WR038031

Bolet, G., Georgakoudis, G., Menon, H. and 5 more (Parasyris, K., ...) (2025). Can Large Language Models Predict Parallel Code Performance? HPDC 2025 - Proceedings of the 34th International Symposium on High-Performance Parallel and Distributed Computing. 10.1145/3731545.3743645

Magri, V., Castelletto, N., Osei-Kuffuor, D. and 5 more (...) (2025). A Multigrid Reduction Framework for Efficient and Scalable Multiphysics Simulations. SPE Reservoir Simulation Symposium Proceedings, 2025–. 10.2118/223898-MS

Shukla, A., Mubarka, Y., Anirudh, R. and 10 more (Bremer, P.-T., Thiagarajan, J.J., ...) (2025). On the Design and Evaluation of Generative Models in High Energy Density Physics. Communications Physics, 8(1). 10.1038/s42005-024-01912-2

Davis, J.H., Sivaraman, P., Kitson, J. and 5 more (Parasyris, K., Menon, H., Georgakoudis, G., ...) (2025). Taking GPU Programming Models to Task for Performance Portability. Proceedings of the International Conference on Supercomputing, 213821776–791. 10.1145/3721145.3730423

Hanke, L.I., Schwoerer, P., Huettl, F. and 9 more (Chheang, V., ...) (2025). Use of an Immersive Virtual Reality Application to Educate Medical Students in Patient Handover: Pilot Study. JMIR Serious Games, 13. 10.2196/73907

Lumsden, I., Devarajan, H., Yildirim, I. and 13 more (Brink, S., Pearce, O., Scogland, T., ...) (2025). Optimizing I/O for an Exascale Implicit Kinetic Plasma Simulation using the Rabbit Storage System. Proceedings of the 2025 IEEE International Conference on Cluster Computing Workshops, CLUSTER Workshops 2025. 10.1109/CLUSTERWorkshops65972.2025.11164212

Wang, X., Hui, X., Liao, C. and 1 more (...) (2025). Reductive Analysis with Compiler-Guided Large Language Models for Input-Centric Code Optimizations. Proceedings of the ACM on Programming Languages, 9. 10.1145/3729282

Chakraborty, M., Pirkelbauer, P., Yi, Q. (2025). FormalSpecCpp: A Dataset of C++ Formal Specifications created using LLMs. Proceedings - 2025 IEEE/ACM 22nd International Conference on Mining Software Repositories, MSR 2025, 758–762. 10.1109/MSR66628.2025.00113

Ainsworth, M., Dong, J. (2025). Extended Galerkin Neural Network Approximation of Singular Variational Problems with Error Control. SIAM Journal on Scientific Computing, 47(3) C738-C768. 10.1137/24M1658279

Li, Z., Liu, S., Yu, X. and 5 more (Bhavya, K., Diffenderfer, J.D., Bremer, P.-T., ...) (2025). 'Understanding Robustness Lottery': A Geometric Visual Comparative Analysis of Neural Network Pruning Approaches. IEEE Transactions on Visualization and Computer Graphics, 31(9) 6337–6352. 10.1109/TVCG.2024.3514996

Aydin, F., Georgouli, K., Pottier, L. and 8 more (Bremer, P.-T., ...) (2025). Enhanced Exploration of Protein Conformational Space through Integration of Ultra-Coarse-Grained Models to Multiscale Workflows. Journal of Physical Chemistry B, 129(20) 4895–4903. 10.1021/acs.jpcb.4c08622

Casey, D.T., Kunimune, J., Hurricane, O.A. and 20 more (Gaffney, J.A., Milovich, J., ...) (2025). A Multi-Rocket Piston Model to Study Three-Dimensional Asymmetries in Implosions at the National Ignition Facility. High Energy Density Physics, 54. 10.1016/j.hedp.2024.101172

Juhasz, M., Chin, E., Choi, Y. and 2 more (...) (2025). Harnessing On-Machine Metrology Data for Prints with a Surrogate Model for Laser Powder Directed Energy Deposition. Additive Manufacturing, 105. 10.1016/j.addma.2025.104745

Miao, D., Laguna, I., Rubio-González, C. (2025). FloatGuard: Efficient Whole-Program Detection of Floating-Point Exceptions in AMD GPUs. HPDC 2025 - Proceedings of the 34th International Symposium on High-Performance Parallel and Distributed Computing. 10.1145/3731545.3731586

Huber, T., Huettl, F., Vradelis, L. and 10 more (Chheang, V., ...) (2025). Virtual Reality in Liver Surgery—Planning, Advanced Training, Testing. Chirurgie (Germany), 96(1) 16–22. 10.1007/s00104-024-02216-5

Cho, M.S., Grabowski, P.E., Thopalli, K. and 11 more (Thiagarajan, J.J., Anirudh, R., Gaffney, J.A., Bremer, P.-T., ...) (2025). Physics-Informed Transformation Toward Improving the Machine-Learned NLTE Models of ICF Simulations. Physical Review Research, 7(2). 10.1103/PhysRevResearch.7.023150

Valencia Zuluaga, T., Oren, S.S. (2025). Stable and Fair Uniform Price Allocations of Community Choice Aggregation Gains in Retail Electricity Markets. Energy Systems. 10.1007/s12667-025-00737-4

Jeon, E.S., Choi, H., Buman, M.P., and 1 more (...) (2025). Role of Mixup in Topological Persistence-Based Knowledge Distillation for Wearable Sensor Data. IEEE Sensors Journal, 25(3) 5853–5865. 10.1109/JSEN.2024.3517653

Ashworth, W.J., Lumsden, I., Garlick, J. and 8 more (Pearce, O., Brink, S., Milroy, D., Patki, T., Scogland, T., ...) (2025). Flux Emulator: First Insights into Optimizing Scheduling for Exascale HPC. HPDC 2025 - Proceedings of the 34th International Symposium on High-Performance Parallel and Distributed Computing. 10.1145/3731545.3735121

Wahlgren, J., Schieffer, G., Shi, R. and 4 more (Pearce, R., Gokhale, M., ...) (2025). Dissecting CPU–GPU Unified Physical Memory on AMD MI300A APUs. Proceedings - 2025 IEEE International Symposium on Workload Characterization, IISWC 2025, 368–380. 10.1109/IISWC66894.2025.00038

Giovannelli, A., Davari, S., Connor, C. and 7 more (Miao, H., Chheang, V., Bremer, P.-T., ...) (2025). Exploring Bichronous Collaboration in Virtual Environments. Proceedings of the ACM Symposium on Virtual Reality Software and Technology, VRST, 21535. 10.1145/3756884.3766036

Dorf, M., Dorr, M., Ghosh, D. and 2 more (...) (2025). Implicit Full-F Simulations of Neoclassical Ion Transport. Physics of Plasmas, 32(8). 10.1063/5.0280028

Lamar, K., Pirkelbauer, P., Painter, Z. and 1 more (...) (2025). ROSE LCOM Tools. Proceedings of the ACM SIGSOFT Symposium on the Foundations of Software Engineering, 134–14310.1145/3696630.3728539

Bhattacharjee, K., Kundu, S., Chakraborty, I. and 1 more (...) (2025). Who Should I Trust? A Visual Analytics Approach for Comparing Net Load Forecasting Models. 2025 IEEE PES Grid Edge Technologies Conference and Exposition, Grid Edge 2025. 10.1109/GridEdge61154.2025.10887523

McKinsey, M., Brink, S., Pearce, O. (2025). Using Parallel Performance Data to Classify Parallel Algorithms. Lecture Notes in Computer Science, 15579242–255. 10.1007/978-3-031-85697-6_16

Thopalli, K., Narayanaswamy, V., Thiagarajan, J.J. (2025). The Surprising Utility of Group Partitioning in Improving Conformal Prediction of Visual Classifiers Under Distributional Shifts. IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops, 1733–1742. 10.1109/CVPRW67362.2025.00162

Jakeman, J.D., Perego, M., Seidl, D.T. and 4 more (Hartland, T.A., ...) (2025). An Evaluation of Multi-Fidelity Methods for Quantifying Uncertainty in Projections of Ice-Sheet Mass Change. Earth System Dynamics, 16(2) 513–544. 10.5194/esd-16-513-2025

Choi, H., Jeon, E.S., Shukla, A. and 1 more (...) (2025). Intra-Class Patch Swap for Self-Distillation. Neurocomputing, 645. 10.1016/j.neucom.2025.130408

Mittal, K., Barrera, J.-L., Kolev, T. and 2 more (Tomov, V., ...) (2025). High-Order Mesh hr-Adaptivity for Surface Fitting to Implicit Geometries. Lecture Notes in Computational Science and Engineering, 142347–364. 10.1007/978-3-031-76988-7_18

Ather, H.B., Wang, C., Devarajan, H. and 2 more (Mohror, K., ...) (2025). SmartIO: A Lightweight End-to-End Workflow for Runtime I/O Optimization of HPC Systems. Proceedings of 2025 Workshops of the International Conference on High Performance Computing, Network, Storage, and Analysis, SC 2025 Workshops, 1396–1405. 10.1145/3731599.3767509

Pazner, W. (2025). Subspace and Auxiliary Space Preconditioners for High-Order Interior Penalty Discretizations in H (div). ESAIM: Mathematical Modelling and Numerical Analysis, 59(4) 1909–1936. 10.1051/m2an/2025045

Taylor, S., Roald, L.A., Musselman, A., Watson, J.-P. (2025). Optimizing Power Line Undergrounding Decisions under Varying Wildfire Risk and Weather Scenarios. 2025 IEEE Kiel PowerTech, PowerTech 2025. 10.1109/PowerTech59965.2025.11180738

Paradis, C., Hammond, D., Thoma, J. and 7 more (Gaffney, J., ...) (2025). Bridging the Laser Technology Gap: Advancing Towards Commercial Direct Drive Inertial Fusion Energy. Proceedings of SPIE - The International Society for Optical Engineering, 13358. 10.1117/12.3041451

Anistratov, D.Y., Haut, T.S. (2025). Multilevel Method with Low-Order Equations of Mixed Types and Two Grids in Photon Energy for Thermal Radiative Transfer. Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science and Engineering, M and C 2025, 1547–1556. 10.13182/MC25-47070

McDonald, J., Wong, Y.-C., Mehta, K. and 5 more (Pottier, L., ...) (2025). Determining Levels of Detail for Simulators of Parallel and Distributed Computing Systems via Automated Calibration. Proceedings of 2025 Workshops of the International Conference on High Performance Computing, Network, Storage, and Analysis, SC 2025 Workshops, 1452–1463. 10.1145/3731599.3767698

Panta, A., Sahistan, A., Huang, X. and 7 more (Lindstrom, P., ...) (2025). Expanding Access to Science Participation: A FAIR Framework for Petascale Data Visualization and Analytics. IEEE Transactions on Visualization and Computer Graphics. 10.1109/TVCG.2025.3642878

Tranquilli, P., Ricketson, L., Haut, T., Hittinger, J. (2025). Stage-Local Partitioned Two-Step Runge–Kutta Methods for Large Systems of Ordinary Differential Equations. BIT Numerical Mathematics, 65(4). 10.1007/s10543-025-01090-9

Van De Wetering, J.J., Angus, J.R., Farmer, W. and 5 more (Ghosh, D., ...) (2025). Particle-in-Cell Simulations of Burning Inertial Confinement Fusion Capsule Implosions. Physical Review E, 112(4). 10.1103/zwjx-jbxl

Zheng, H., Tsai, E., Lu, Y. and 4 more (Kailkhura, B., ...) (2025). Elfs: Label-Free Coreset Selection with Proxy Training Dynamics. 13th International Conference on Learning Representations, ICLR 2025, 98959–98978

Bowen, J., Parasyris, K., Beckingsale, D. and 3 more (Ben-Nun, T., Georgakoudis, G....) (2025). Extending RAJA Parallel Programming Abstractions with Just-In-Time Optimization. Proceedings of 2025 Workshops of the International Conference on High Performance Computing, Network, Storage, and Analysis, SC 2025 Workshops, 1159–1171. 10.1145/3731599.3767492

Ngo, M., Boone, A., Pham, T., Chakraborty, I. (2025). XGridDS: An Explainable Data Analytics Toolkit for Grid Operations. 2025 IEEE PES Grid Edge Technologies Conference and Exposition, Grid Edge 2025. 10.1109/GridEdge61154.2025.10887493

Alsaadi, A., Hategan-Marandiuc, M., Maheshwari, K. and 9 more (Laney, D., ...) (2025). Exascale Workflow Applications and Middleware: An ExaWorks Retrospective. International Journal of High Performance Computing Applications, 39(4) 579–593. 10.1177/10943420251331674

Wang, D., Wang, C., Cao, Q. and 7 more (Mohror, K., ...) (2025). Scaling Ultrahigh-Resolution E3SM Land Model for Leadership-Class Supercomputers. Proceedings - 2025 IEEE 25th International Symposium on Cluster, Cloud and Internet Computing Workshops, CCGridW 2025, 252–255. 10.1109/CCGridW65158.2025.00050

Doerfert, J., Grosser, T. (2025). Welcome from the General Chairs. CGO 2025 - Proceedings of the 23rd ACM/IEEE International Symposium on Code Generation and Optimization, iii–iv.

Maiterth, M., Brewer, W.H., Kuruvella, J.S. and 8 more (Patki, T., ...) (2025). HPC Digital Twins for Evaluating Scheduling Policies, Incentive Structures and their Impact on Power and Cooling. Proceedings of 2025 Workshops of the International Conference on High Performance Computing, Network, Storage, and Analysis, SC 2025 Workshops, 1959–1969. 10.1145/3731599.3767559

Soper, B., Lisicki, M., Silva, M. and 5 more (...) (2025). Knowledge Graph-Aided Bayesian Active Learning for Top-K Genetic Interaction Discovery. Scientific Reports, 15(1). 10.1038/s41598-025-13972-7

Fairbanks, H.R., Kalchev, D.Z., Lee, C.S. and 1 more (...) (2025). Scalable Multilevel Monte Carlo Methods Exploiting Parallel Redistribution on Coarse Levels. International Journal of High Performance Computing Applications. 10.1177/10943420251394441

Mohole, S., Choi, H., Liu, S. and 6 more (Klymko, C., Sakla, W.A., Beckingsale, D., ...) (2025). VERIRAG: Healthcare Claim Verification via Statistical Audit in Retrieval-Augmented Generation. BCB 2025 - Proceedings of the 16th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. 10.1145/3765612.3767788

Belcher, K., Beckingsale, D. (2025). Umpire: Portable Memory Management for High-Performance Computing Applications. Proceedings of 2025 Workshops of the International Conference on High Performance Computing, Network, Storage, and Analysis, SC 2025 Workshops, 1104–1109. 10.1145/3731599.3767486

Patki, T., Rountree, B., Wilde, T. and 13 more (Brink, S., ...) (2025). A Global Perspective on Supercomputer Power Provisioning: Case Studies from United States and Europe. Proceedings of the International Conference on Supercomputing, 2138211034–1051. 10.1145/3721145.3734532

Zhuang, C., Zhang, L., Wu, D. and 8 more (Dryden, N., ...) (2025). Scaling Large-scale GNN Training to Thousands of Processors on CPU-based Supercomputers. Proceedings of the International Conference on Supercomputing, 21382157–72. 10.1145/3721145.3730422

Qiu, M., Hu, X., Zhan, F. and 6 more (Kailkhura, B., ...) (2025). GRNFormer: A Biologically-Guided Framework for Integrating Gene Regulatory Networks into RNA Foundation Models. Proceedings of the Annual Meeting of the Association for Computational Linguistics, 3805–3819. 10.18653/v1/2025.findings-acl.196

Schaad, P., Ben-Nun, T., Hoefler, T. (2025). C.A.T.S.: Memory and Control Flow Tracing for Whole-Program Performance Analysis. Proceedings of the International Conference for High Performance Computing, Networking, Storage, and Analysis, SC 2025, 331–348. 10.1145/3712285.3759797

Domke, J., Wahib, M., Dubey, A. and 2 more (Ben-Nun, T., Draeger, E.W., ...) (2025). A Unifying Framework to Enable Artificial Intelligence in High-Performance Computing Workflows. Computing in Science and Engineering, 27(1) 73–78. 10.1109/MCSE.2025.3543940

Vogman, G.V., Ho, A., Hammer, J.H. (2025). Parameterized Anomalous Transport Model for Current-Carrying Collisionless Plasmas in Pulsed Power Inertial Confinement Fusion. Physics of Plasmas, 32(8). 10.1063/5.0278612

Banday, B., Thopalli, K., Islam, T.Z., Thiagarajan, J.J. (2025). On The Role of Prompt Construction in Enhancing Efficacy and Efficiency of LLM-Based Tabular Data Generation. ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing – Proceedings. 10.1109/ICASSP49660.2025.10888077

Golovich, N., Steil, T., Geringer-Sameth, A. and 3 more (Iwabuchi, K., Pearce, R., ...) (2025). Survey-Wide Asteroid Discovery with a High-Performance Computing Enabled Non-Linear Digital Tracking Framework. Astronomy and Computing, 53. 10.1016/j.ascom.2025.100987

Osterhout, A., Laguna, I., Gopalakrishnan, G. (2025). Scabbard: LLVM Instrumentation-aided Race Checking in CPU/GPU Unified Memory for AMD GPUs. Proceedings of 2025 Workshops of the International Conference on High Performance Computing, Network, Storage, and Analysis, SC 2025 Workshops, 1057–1065. 10.1145/3731599.3767481

Alvarez, J., Henderson, K., Aufderheide, M.B. and 3 more (Gallagher, B., Jiang, M., ...) (2025). Sparse-Data Deep Learning Strategies for Radiographic Non-Destructive Testing. Research in Nondestructive Evaluation, 36(4) 159–176. 10.1080/09349847.2025.2519070

Datta, G., Liu, Z., Diffenderfer, J. and 2 more (Kailkhura, B., ...) (2025). When SNN meets ANN: Error-Free ANN-to-SNN Conversion for Extreme Edge Efficiency. Transactions on Machine Learning Research, 202–.

Veldt, N., Stanley, T., Priest, B.W. and 4 more (Steil, T., Iwabuchi, K., Sanders, G., ...) (2025). Approximate Forest Completion and Learning-Augmented Algorithms for Metric Minimum Spanning Trees. Proceedings of Machine Learning Research, 26761126–61149.

Sottile, M., Tekriwal, M., Sarracino, J. (2025). Towards Richer Challenge Problems for Scientific Computing Correctness. Electronic Proceedings in Theoretical Computer Science, EPTCS, 43219–26. 10.4204/EPTCS.432.4

Yao, J., Maliyov, I., Gardner, D.J. and 2 more (Woodward, C.S., ...) (2025). Advancing Simulations of Coupled Electron and Phonon Nonequilibrium Dynamics Using Adaptive and Multirate Time Integration. npj Computational Materials, 11(1). 10.1038/s41524-025-01738-8

Carpenter, T.S., Aydin, F., Neale, C. and 37 more (Liu, S., Reddy, T., Bremer, P.-T., ...) (2025). Dynamics and Lipid Membrane Coupling of the RAS–RAF Complex Revealed via Multiscale Simulations. Biophysical Journal. 10.1016/j.bpj.2025.08.020

Clark, D.S., Allen, A., Baxamusa, S.H. and 18 more (Milovich, J., ...) (2025). Response to “Comment on ‘Modeling Ablator Defects as a Source of Mix in High-Performance Implosions at the National Ignition Facility’ [Phys. Plasmas 32, 034701 (2025)]”. Physics of Plasmas, 32(4). 10.1063/5.0255085

Yokelson, D., Brink, S., Burmark, J. and 6 more (Mckinsey, M., Scogland, T., Pearce, O., ...) (2025). Cross-Architecture Performance Analysis Using the RAJA Performance Suite. 54th International Conference on Parallel Processing, ICPP 2025 - Main Conference Proceedings, 617–626. 10.1145/3754598.3754668

Kim, Y., Kong, Q., Choi, Y. and 2 more (Yoo, B., ...) (2025). Real-Time Reconstruction of Ground Motion During Small Magnitude Earthquakes: A Pilot Study. Soil Dynamics and Earthquake Engineering, 199. 10.1016/j.soildyn.2025.109707

Southworth, B.S., Walton, S., Roberts, S.B. and 1 more (...) (2025). Moment-Based Adaptive Time Integration for Thermal Radiation Transport. Journal of Computational Physics, 543. 10.1016/j.jcp.2025.114417

Choudhuri, A., Zhong, Y., Moharrami, M. and 4 more (Klymko, C., Heimann, M., Thiagarajan, J.J., ...) (2025). Conformal Edge-Weight Prediction in Latent Space. 2025 SIAM International Conference on Data Mining, SDM 2025, 161–170. 10.1137/1.9781611978520.15

Ramadan, T., Pinnow, N., Phelps, C. and 2 more (Thiagarajan, J.J., ...) (2025). Structure-Aware Representation Learning for Effective Performance Prediction. Concurrency and Computation: Practice and Experience, 37(9–11). 10.1002/cpe.70046

Wu, J., Ren, J., Yang, S. and 4 more (Parasyris, K., Georgakoudis, G., Laguna, I., ...) (2025). LM-Offload: Performance Model-Guided Generative Inference of Large Language Models with Parallelism Control. Proceedings - 2025 IEEE International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2025, 840–849. 10.1109/IPDPSW66978.2025.00134

Dey, A., Antony, N., Dhakal, A.R. and 7 more ( Thopalli, K., Thiagarajan, J.J., Patki, T., Marathe, A., Scogland, T., Yeom, J.-S., ...) (2025). ModelX : A Novel Transfer Learning Approach Across Heterogeneous Datasets. HPDC 2025 - Proceedings of the 34th International Symposium on High-Performance Parallel and Distributed Computing. 10.1145/3731545.3731593

Lee, H.-H., Arthur, R.S., Golaz, J.-C. and 3 more (Watson, J.-P., ...) (2025). Using multiple High-Resolution Datasets to Benchmark the Energy Exascale Earth System Model (E3SM) for Renewable Resource Assessment. AIP Advances, 15(10). 10.1063/5.0274286

Ricketson, L.F., Hu, J. (2025). An Explicit, Energy-Conserving Particle-in-Cell Scheme. Journal of Computational Physics, 537. 10.1016/j.jcp.2025.114098

Nansamba, G., Namugwanya, E., Boehme, D. and 6 more (Mckinsey, M., Pearce, O., ...) (2025). Leveraging Caliper and Benchpark to Analyze MPI Communication Patterns: Insights from AMG2023, Kripke, and Laghos. 2025 IEEE High Performance Extreme Computing Conference, HPEC 2025. 10.1109/HPEC67600.2025.11196105

Cappello, F., Underwood, R., Alexeev, Y. and 29 more (Li, S., Lindstrom, P., ...) (2025). What to Support When You're Compressing the State of Practice Gaps and Opportunities for Scientific Data Compression. Proceedings of the International Conference for High Performance Computing, Networking, Storage, and Analysis, SC 2025, 1966–1979. 10.1145/3712285.3759856

Huang, Y., Chen, C., Cheng, L. and 3 more (Kailkhura, B., ...) (2025). Socially Responsible and Trustworthy Generative Foundation Models: Principles, Challenges, and Practices. CIKM 2025 - Proceedings of the 34th ACM International Conference on Information and Knowledge Management, 6825–6828. 10.1145/3746252.3761448

Biswas, A., Ketcheson, D.I., Roberts, S. and 2 more (...) (2025). Explicit Runge–Kutta Methods that Alleviate Order Reduction. SIAM Journal on Numerical Analysis, 63(4) 1398–1426. 10.1137/23M1606812

Lumsden, I., Markidis, S., Hu, A. and 10 more (Brink, S., Pearce, O., Scogland, T., Devarajan, H., ...) (2025). Performance Optimization of an Exascale Implicit Kinetic Plasma Simulation on El Capitan. Proceedings - 2025 IEEE International Conference on e-Science, eScience 2025, 319–320. 10.1109/eScience65000.2025.00050

Devarajan, H., Heber, G., Mohror, K. (2025). H5Intent: Autotuning HDF5 with User Intent. IEEE Transactions on Parallel and Distributed Systems, 36(2) 108–119. 10.1109/TPDS.2024.3492704

Huang, X., Miao, H., Kim, H. and 5 more (Bremer, P.-T., ...) (2025). Bimodal Visualization of Industrial X-Ray and Neutron Computed Tomography Data. IEEE Transactions on Visualization and Computer Graphics, 31(4) 2196–2210. 10.1109/TVCG.2024.3382607

Reddy, S., Fairbanks, H.R. (2025). Accelerating Multilevel Markov Chain Monte Carlo Using Machine Learning Models. Physica Scripta, 100(5). 10.1088/1402-4896/adb52a

Cooke, J., Falls, J., Strebe, K. and 5 more (Salari, K., ...) (2025). Analysis of the Density Field Around a Supersonic Conical Projectile Using Quantitative Schlieren. Measurement Science and Technology, 36(8). 10.1088/1361-6501/adf985

Pokornik, M., Khan, S.F., Gaffney, J.A. and 4 more (...) (2025). Investigating Performance and Variability of NIF ICF experiments with Deep Learning. Nuclear Fusion, 65(7). 10.1088/1741-4326/addc7f

Hittinger, J., Inoue, K. (2025). Foreword from the Technical Paper Chair. Proceedings of the International Conference for High Performance Computing, Networking, Storage, and Analysis, SC 2025, vi–vii.

Lops, Y., Anderson, G.J., Lucas, D.D. and 2 more (Chakraborty, I., ...) (2025). Evaluating Probabilistic Deep Learning Methods for Uncertainty Quantification of Temperature Downscaling. Machine Learning: Science and Technology, 6(4). 10.1088/2632-2153/ae281e

Kaufman, J.L., Smith, K.D., Heo, T.W. and 3 more (Keilbart, N.D., ...) (2025). Chromium versus Aluminum: Impact of Nickel Alloy Composition and Interfacial Kinetics on High-Temperature Passivating Oxide Formation. Journal of the American Chemical Society, 147(46) 42287–42298. 10.1021/jacs.5c10415

Vargas, A., Tomov, V.Z., Skinner, M.A. and 4 more (Dobrev, V., Nikl, J., Kolev, T., ...) (2025). Multi-Material ALE Remap with Interface Sharpening Using High-Order Matrix-Free Finite Element Methods. Journal of Computational Physics, 542. 10.1016/j.jcp.2025.114367

Oudin, A., Ghosh, D., Riconda, C. and 7 more (...) (2025). PIAFS: A 2D Nonlinear Hydrodynamics Code to Model Gaseous Optics. Physics of Plasmas, 32(7). 10.1063/5.0268318

Ouyang, Y., Gu, H., Lin, S. and 6 more (Kailkhura, B., ...) (2025). Layer-Level Self-Exposure and Patch: Affirmative Token Mitigation for Jailbreak Attack Defense. Proceedings of the 2025 Annual Conference of the Nations of the Americas Chapter of the Association for Computational Linguistics: Human Language Technologies: Long Papers, NAACL-HLT 2025, 112541–12554. 10.18653/v1/2025.naacl-long.623

Ivanov, I.R., Domke, J., Endo, T., Doerfert, J. (2025). Dynamic Thread Coarsening for CPU and GPU OpenMP Code. Proceedings of 2025 Workshops of the International Conference on High Performance Computing, Network, Storage, and Analysis, SC 2025 Workshops, 1066–1074. 10.1145/3731599.3767482

Christopher, J.K., Bartoldson, B.R., Ben-Nun, T. and 3 more (Kailkhura, B., ...) (2025). Speculative Diffusion Decoding: Accelerating Language Generation through Diffusion. Proceedings of the 2025 Annual Conference of the Nations of the Americas Chapter of the Association for Computational Linguistics: Human Language Technologies: Long Papers, NAACL-HLT 2025, 112042–12059. 10.18653/v1/2025.naacl-long.601

Bujack, R., Gokhale, M., Ionkov, L. and 13 more (Iwabuchi, K., Pearce, R., ...) (2025). The ECP SICM Project: Managing Complex Memory Hierarchies for Exascale Applications. International Journal of High Performance Computing Applications, 39(1) 193–207. 10.1177/10943420241288243

Goswami, B., Chakraborty, I., Chatterjee, A. (2025). Small In-Plane Oscillations of a Slack Catenary Using Assumed Modes. Journal of Vibration Engineering and Technologies, 13(6). 10.1007/s42417-025-01807-8

Xia, Z., Zhu, L., Li, B. and 5 more (Liao, C., ...) (2025). Analyzing 16,193 LLM Papers for Fun and Profits. Proceedings - 2025 IEEE Cloud Summit, Cloud-Summit 2025, 29–34. 10.1109/Cloud-Summit64795.2025.00012

Jeong, S., Li, M., Berger, M., Liu, S.. Concept Lens: Visual Comparison and Evaluation of Generative Model Manipulations. IEEE Transactions on Visualization and Computer Graphics, 31(10) 8243–8255. 10.1109/TVCG.2025.3564537

Ornelas-Munoz, J., Terasaki, G.M., Ranganath, A. and 2 more (...) (2025). Signal Reconstructions for ECG-Transmembrane Voltage Potentials Using Transformers. Proceedings - International Symposium on Biomedical Imaging. 10.1109/ISBI60581.2025.10981210

Yellapragada, S., Thopalli, K., Narayanaswamy, V. and 5 more (Sakla, W., Thiagarajan, J.J., ...) (2025). Leveraging Registers in Vision Transformers for Robust Adaptation. ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing – Proceedings. 10.1109/ICASSP49660.2025.10889287

Chi, B.T., Fulcar, S., Ipe, J. and 13 more (Pottier, L., Hsu, T., ...) (2025). Integrating Ultra-Coarse-Grained Protein Models into Accessible Workflows for Multiscale Molecular Dynamics. ACS Omega, 10(43) 51726–51737. 10.1021/acsomega.5c07601

Krzysik, O.A., Sterck, H.D.E., Falgout, R.D., and 1 more (...) (2025). Parallel-in-Time Solution of Scalar Nonlinear Conservation Laws. SIAM Journal on Scientific Computing, 47(6) 3134–3160. 10.1137/24M1630268

Sochat, V., Pottier, L., Milroy, D. (2025). State Machine Orchestration of an HPC Workflow in Cloud. Proceedings of 2025 Workshops of the International Conference on High Performance Computing, Network, Storage, and Analysis, SC 2025 Workshops, 2293–2304. 10.1145/3731599.3767583

McKinsey, M., Brink, S., Lam, S. and 2 more (Pearce, O., ...) (2025). Thicket Workflow for Classifying Parallel Sorting Algorithms. HPDC 2025 - Proceedings of the 34th International Symposium on High-Performance Parallel and Distributed Computing. 10.1145/3731545.3736814

Takizawa, H., Godoy, W., Ohshima, S. and 23 more (Doerfert, J., ...) (2025). 20th IEEE International Workshop on Automatic Performance Tuning (iWAPT 2025). Proceedings - 2025 IEEE International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2025, 209–210. 10.1109/IPDPSW66978.2025.00038

Baker, K.L., Casey, D.T., Clark, D.S. and 37 more (Milovich, J., ...) (2025). Effect on Compression of Lowering the Design Adiabat in the SQ-n Campaign. Physical Review E, 112(4). 10.1103/hrvf-p1q2

Fletcher, L., Steil, T., Pearce, R. (2025). RaNT-Graph: A Scalable Approach to Sampling Billions of Walks or Paths from Weighted Graphs. Proceedings - 2025 IEEE International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2025, 777–786. 10.1109/IPDPSW66978.2025.00123

Lai, H.-M., Lin, P.-H., Gokhale, M. and 3 more (...) (2025). RISC-V Vectorization Coverage for HPC: A TSVC-Based Analysis. Proceedings of 2025 Workshops of the International Conference on High Performance Computing, Network, Storage, and Analysis, SC 2025 Workshops, 1676–1683. 10.1145/3731599.3767535

Sallaberry, G., Priest, B.W., Armstrong, R. and 4 more (Steil, T., Iwabuchi, K., ...) (2025). A Scalable Gaussian Process Approach to Shear Mapping with MuyGPs. Astrophysical Journal, 981(2). 10.3847/1538-4357/adb0b7

Pearce, O., Becker, G., Brink, S. and 4 more (Rountree, B., ...) (2025). HPC Benchmarking: Repeat, Replicate, Reproduce. Proceedings of the 3rd ACM Conference on Reproducibility and Replicability, ACM REP 2025, 85–95. 10.1145/3736731.3746150

You, Y.-P., Lin, P.-H. (2025). Message from the ICPP-EMS 2025 workshop Program Chairs. 54th International Conference on Parallel Processing, ICPP 2025 - Workshops Proceedings. 10.1145/3750720

Dhakal, A.R., Islam, T.Z., Dey, A. and 5 more (Nichols, D., Patki, T., Scogland, T., Yeom, J.-S., ...) (2025). XAMM: 'Attention' to Details Improves Cross-Platform Prediction Accuracy. Proceedings - 2025 IEEE 25th International Symposium on Cluster, Cloud and Internet Computing, CCGrid 2025, 373–382. 10.1109/CCGRID64434.2025.00067

Petersson, N.A., Günther, S., Chung, S.W. (2025). A Time-Parallel Multiple-Shooting Method for Large-Scale Quantum Optimal Control. Journal of Computational Physics, 524. 10.1016/j.jcp.2024.113712

Zhuang, C., Chen, P., Liu, X. and 6 more (Dryden, N., ...) (2025). POSTER: A General and Scalable GCN Training Framework on CPU Supercomputers. Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, PPOPP, 566–568. 10.1145/3710848.3710860

Stephany, R. (2025). DDE-Find: Learning Delay Differential Equations from Noisy, Limited Data. Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, 481(2310). 10.1098/rspa.2024.0403

Pozulp, M., Haut, T., Brantley, P. and 2 more (...) (2025). A Hybrid Second Moment Method for Thermal Radiative Transfer. Proceedings of the International Conference on Mathematics and Computational Methods Applied to Nuclear Science and Engineering, M and C 2025, 1518–1527. 10.13182/MC25-46431

Dorf, M., Dorr, M., Geyko, V. and 3 more (Ghosh, D., ...) (2025). Semi-Implicit Continuum Kinetic Modeling of Weakly Collisional Parallel Transport in a Magnetic Mirror. Physics of Plasmas, 32(10). 10.1063/5.0293154

Chen, R., Perin, G.J., Chen, X. and 5 more (Kailkhura, B., ...) (2025). Extracting and Understanding the Superficial Knowledge in Alignment. Proceedings of the 2025 Annual Conference of the Nations of the Americas Chapter of the Association for Computational Linguistics: Human Language Technologies: Long Papers, NAACL-HLT 2025, 13265–3280. 10.18653/v1/2025.naacl-long.168

Cai, Z., Doktorova, A., Falgout, R.D. and 1 more (...) (2025). Efficient Shallow Ritz Method for 1D Diffusion P roblems Image 1. Computers and Mathematics with Applications, 200349–363. 10.1016/j.camwa.2025.10.020

Hartland, T., Petra, C.G., Petra, N. and 1 more (...) (2025). A Scalable Interior-Point Gauss–Newton Method for PDE-Constrained Optimization with Bound Constraints. Numerical Linear Algebra with Applications, 32(6). 10.1002/nla.70040

Abu-Shawareb, H., Acree, R., Adams, P. and 1,352 more (Anderson, R., Gunney, B., Milovich, J., Chheang, V., Fisher, A., ...) (2024). Achievement of Target Gain Larger than Unity in an Inertial Fusion Experiment. Physical Review Letters, 132(6). 10.1103/PhysRevLett.132.065102

Chheang, V., Sharmin, S., Marquez-Hernandez, R. and 7 more (...) (2024). Towards Anatomy Education with Generative AI-based Virtual Assistants in Immersive Virtual Reality Environments. Proceedings: 2024 IEEE International Conference on Artificial Intelligence and eXtended and Virtual Reality, AIxVR 2024, 21–30. 10.1109/AIxVR59861.2024.00011

Janicot, R., Maziarz, M., Park, J.-C. and 8 more (Green, E., …) (2024). Direct Interrogation of Context-Dependent GPCR Activity with a Universal Biosensor Platform. Cell, 187(6) 1527–1546.e25. 10.1016/j.cell.2024.01.028

Chheang, V., Schott, D., Saalfeld, P. and 6 more (...) (2024). Advanced Liver Surgery Training in Collaborative VR Environments. Computers and Graphics (Pergamon), 119. 10.1016/j.cag.2024.01.006

Clark, D.S., Allen, A., Baxamusa, S.H. and 18 more (Milovich, J., ...) (2024). Modeling Ablator Defects as a Source of Mix in High-Performance Implosions at the National Ignition Facility. Physics of Plasmas, 31(6). 10.1063/5.0200730

Bonneville, C., Choi, Y., Ghosh, D. and 1 more (...) (2024). GPLaSDI: Gaussian Process-based interpretable Latent Space Dynamics Identification through Deep Autoencoder. Computer Methods in Applied Mechanics and Engineering, 418. 10.1016/j.cma.2023.116535

Ralph, J.E., Ross, J.S., Zylstra, A.B. and 153 more ( Kustowski, B., Milovich, J., ...) (2024). The Impact of Low-Mode Symmetry on Inertial Fusion Energy Output in the Burning Plasma State. Nature Communications, 15(1). 10.1038/s41467-024-47302-8

Diaz, A.N., Choi, Y., Heinkenschloss, M. (2024). A Fast and Accurate Domain Decomposition Nonlinear Manifold Reduced Order Model. Computer Methods in Applied Mechanics and Engineering, 425. 10.1016/j.cma.2024.116943

Stephany, R., Earls, C. (2024). PDE-LEARN: Using Deep Learning to Discover Partial Differential Equations from Noisy, Limited Data. Neural Networks, 174. 10.1016/j.neunet.2024.106242

Werellapatha, K., Palmer, N.E., Gorman, M.G. and 36 more (Masters, N., Singh, G., ...) (2024). Time-Resolved X-ray Diffraction Diagnostic Development for the National Ignition Facility. Review of Scientific Instruments, 95(1). 10.1063/5.0161343

Segear, S., Chheang, V., Baron, L. and 3 more (...) (2024). Visual Feedback and Guided Balance Training in an Immersive Virtual Reality Environment for Lower Extremity Rehabilitation. Computers and Graphics (Pergamon), 119. 10.1016/j.cag.2024.01.007

Jain, N., Chiang, P.-Y., Wen, Y. and 10 more (Kailkhura, B., Li, G., ...) (2024). NEFTUNE: Noisy Embeddings Improve Instruction Finetuning. 12th International Conference on Learning Representations, ICLR 2024.

Stitt, T., Belcher, K., Campos, A. and 7 more (Kolev, T., Tomov, V., ...) (2024). Performance Portable Graphics Processing Unit Acceleration of a High-Order Finite Element Multiphysics Application. Journal of Fluids Engineering, Transactions of the ASME, 146(4). 10.1115/1.4064493

Liu, S., Bocklund, B., Diffenderfer, J. and 6 more (Kailkhura, B., Gallagher, B., ...) (2024). A Comparative Study of Predicting High Entropy Alloy Phase Fractions with Traditional Machine Learning and Deep Neural Networks. Computational Materials, 10(1). 10.1038/s41524-024-01335-1

Schmidt, M.R., Barrera, J.L., Mittal, K. and 2 more (...) (2024). Level-Set Topology Optimization with PDE Generated Conformal Meshes. Structural and Multidisciplinary Optimization, 67(10). 10.1007/s00158-024-03870-3

Huang, Y., Sun, L., Wang, H. and 68 more (Kailkhura, B., Jiang, M., Chen, X., Liu, Y., Wang, J., ...) (2024). Position: TRUSTLLM: Trustworthiness in Large Language Models. Proceedings of Machine Learning Research, 23520166–20270.

Fattebert, J.-L., Negre, C.F.A., Finkelstein, J. and 6 more (Osei-Kuffuor, D., Zhang, Y., ...) (2024). Hybrid Programming-Model Strategies for GPU Offloading of Electronic Structure Calculation Kernels. Journal of Chemical Physics, 160(12). 10.1063/5.0198797

Lauzon, J.T., Cheung, S.W., Shin, Y. and 3 more (Choi, Y., Copeland, D.M., ...) (2024). S-Opt: A Points Selection Algorithm for Hyper-Reduction in Reduced Order Models. SIAM Journal on Scientific Computing, 46(4) B474-B501. 10.1137/22M1484018

Nichols, D., Marathe, A., Menon, H. and 2 more (Bhatele, A., ...) (2024). HPC-Coder: Modeling Parallel Programs using Large Language Models. Research Paper Proceedings of the ISC High Performance 2024.

Liu, S., Miao, H., Li, Z. and 3 more (Bremer, P.-T., ...) (2024). AVA: Towards Autonomous Visualization Agents through Visual Perception-Driven Decision-Making. Computer Graphics Forum, 43(3). 10.1111/cgf.15093

Tran, A., He, X., Messenger, D.A. and 2 more (Choi, Y., ...) (2024). Weak-Form Latent Space Dynamics Identification. Computer Methods in Applied Mechanics and Engineering, 427. 10.1016/j.cma.2024.116998

Landen, O.L., Nora, R.C., Lindl, J.D. and 27 more (Milovich, J., ...) (2024). What Next: Further Implosion Space Exploration on the Path to NIF Extended Yield Capability. Physics of Plasmas, 31(6). 10.1063/5.0209027

Hsu, T., Sadigh, B., Bulatov, V. and 1 more (...) (2024). Score Dynamics: Scaling Molecular Dynamics with Picoseconds Time Steps via Conditional Diffusion Model. Journal of Chemical Theory and Computation, 20(6) 2335–2348. 10.1021/acs.jctc.3c01361

Atallah, N.M., Scovazzi, G. (2024). Nonlinear Elasticity with the Shifted Boundary Method. Computer Methods in Applied Mechanics and Engineering, 426. 10.1016/j.cma.2024.116988

de Franca, F.O., Virgolin, M., Kommenda, M. and 21 more (Lee, C.S., ...) (2024). SRBench++: Principled Benchmarking of Symbolic Regression with Domain-Expert Interpretation. IEEE Transactions on Evolutionary Computation, 1–1. 10.1109/TEVC.2024.3423681

Jeon, E.S., Choi, H., Shukla, A. and 4 more (...) (2024). Topological Persistence Guided Knowledge Distillation for Wearable Sensor Data. Engineering Applications of Artificial Intelligence, 130. 10.1016/j.engappai.2023.107719

Sjögreen, B., Yee, H.C. (2024). Generalization to a Wider Class of Entropy Split Methods for Compressible Ideal MHD. Computers and Fluids, 268. 10.1016/j.compfluid.2023.106087

Kunimune, J.H., Casey, D.T., Kustowski, B. and 8 more (...) (2024). 3D Reconstruction of an Inertial Confinement Fusion Implosion with Neural Networks Using Multiple Heterogeneous Data Sources. Review of Scientific Instruments, 95(7). 10.1063/5.0205656

Chen, A., Zhang, Y., Jia, J. and 7 more (Diffenderfer, J., Parasyris, K., Kailkhura, B., Liu, S., ...) (2024). DEEPZERO: Scaling Up Zeroth-Order Optimization for Deep Model Training. 12th International Conference on Learning Representations, ICLR 2024.

Teterwak, P., Nelson, S., Dryden, N. and 3 more (Saenko, K., Plummer, B., ...) (2024). Learning to Compose SuperWeights for Neural Parameter Allocation Search. Proceedings - 2024 IEEE Winter Conference on Applications of Computer Vision, WACV 2024, 2739–2748. 10.1109/WACV57701.2024.00273

Gianinazzi, L., Ziogas, A.N., Huang, L. and 9 more (Besta, M., Ben-Nun, T., ...) (2024). Arrow Matrix Decomposition: A Novel Approach for Communication-Efficient Sparse Matrix Multiplication. Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, PPOPP, 404–416. 10.1145/3627535.3638496

Wang, J., Chiang, N., Gillette, A. and 1 more (...) (2024). A Multifidelity Bayesian Optimization Method for Inertial Confinement Fusion Design. Physics of Plasmas, 31(3). 10.1063/5.0191543

Andrej, J., Atallah, N., Bäcker, J.-P. and 15 more (Camier, J.S., Copeland, D.M., Dobrev, V., Dudouit, Y., Kolev, T., Mittal, K., Petrides, S., Stowell, M., Tomov, V., ...) (2024). High-Performance Finite Elements with MFEM. International Journal of High Performance Computing Applications, 38(5) 447–467. 10.1177/10943420241261981

Marinak, M.M., Zimmerman, G.B., Chapman, T. and 19 more (Milovich, J., ...) (2024). How Numerical Simulations Helped to Achieve Breakeven on the NIF. Physics of Plasmas, 31(7). 10.1063/5.0204710

Devarajan, H., Pottier, L., Velusamy, K. and 8 more (Yeom, J.S., Mohror, K., ...) (2024). DFTracer: An Analysis-Friendly Data Flow Tracer for AI-Driven Workflows. International Conference for High Performance Computing, Networking, Storage and Analysis, SC. 10.1109/SC41406.2024.00023

Menon, H., Nichols, D., Bhatele, A. and 1 more (...) (2024). Learning to Predict and Improve Build Successes in Package Ecosystems. Proceedings - 2024 IEEE/ACM 21st International Conference on Mining Software Repositories, MSR 2024, 531–542. 10.1145/3643991.3644927

Dzanic, T. (2024). Continuously Bounds-Preserving Discontinuous Galerkin Methods for Hyperbolic Conservation Laws. Journal of Computational Physics, 508. 10.1016/j.jcp.2024.113010

Kwon, H., Hsu, T., Sun, W. and 9 more (Chen, X., ...) (2024). Spectroscopy-Guided Discovery of Three-Dimensional Structures of Disordered Materials with Diffusion Models. Machine Learning: Science and Technology, 5(4). 10.1088/2632-2153/ad8c10

Baker, K.L., Amendt, P.A., Mariscal, D.A. and 38 more (Milovich, J., ...) (2024). Frustraum 1100 Experimental Campaign on the National Ignition Facility. High Energy Density Physics, 53. 10.1016/j.hedp.2024.101158

Gillette, A., Keith, B., Petrides, S. (2024). Learning Robust Marking Policies for Adaptive Mesh Refinement. SIAM Journal on Scientific Computing, 46(1) A264-A289. 10.1137/22M1510613

Gillette, A., Kur, E. (2024). Algorithm 1049: The Delaunay Density Diagnostic. ACM Transactions on Mathematical Software, 50(4). 10.1145/3700134

Lee, C.S., Hamon, F.P., Castelletto, N. and 2 more (Vassilevski, P., ...) (2024). Multilevel Well Modeling in Aggregation-Based Nonlinear Multigrid for Multiphase Flow in Porous Media. Journal of Computational Physics, 513. 10.1016/j.jcp.2024.113163

Sochat, V., Culquicondor, A., Ojea, A. and 1 more (Milroy, D., ...) (2024). The Flux Operator. F1000Research, 13. 10.12688/f1000research.147989.1

Yang, D., Knueven, B., Watson, J.-P. and 1 more (...) (2024). Near-Optimal Solutions for Day-Ahead Unit Commitment. Electric Power Systems Research, 234. 10.1016/j.epsr.2024.110678

Allen, T.S., Bui, Q.M., Petersen, G.M. and 5 more (Wang, J., ...) (2024). Automated Breast Arterial Calcification Score Is Associated with Cardiovascular Outcomes and Mortality. JACC: Advances, 3(11). 10.1016/j.jacadv.2024.101283

Bartoldson, B.R., Diffenderfer, J., Parasyris, K. and 1 more (Kailkhura, B., ...) (2024). Adversarial Robustness Limits via Scaling-Law and Human-Alignment Studies. Proceedings of Machine Learning Research, 2353046–3072.

Wang, C., Mohror, K., Snir, M. (2024). Formal Definitions and Performance Comparison of Consistency Models for Parallel File Systems. IEEE Transactions on Parallel and Distributed Systems, 35(6) 937–951. 10.1109/TPDS.2024.3391058

Vezzoli, M., Nel, L., Bhardwaj, K. and 2 more (Gokhale, M., ...) (2024). Designing an Energy-Efficient Fully Asynchronous Deep Learning Convolution Engine. Proceedings: Design, Automation and Test in Europe.

Hsu, T., Sadigh, B., Bertin, N. and 4 more (...) (2024). Score-Based Denoising for Atomic Structure Identification. Computational Materials, 10(1). 10.1038/s41524-024-01337-z

Elis, B., Pearce, O., Boehme, D. and 2 more (...) (2024). Non-Blocking GPU-CPU Notifications to Enable More GPU-CPU Parallelism. ACM International Conference Proceeding Series, 1. 10.1145/3635035.3635036

Rosemeier, J., Haut, T., Wingate, B. (2024). Multilevel Parareal Algorithm with Averaging for Oscillatory Problems. SIAM Journal on Scientific Computing, 46(4) A2709-A2736. 10.1137/23M1547123

Vugrin, E.D., Hanson, S., Cruz, J. and 3 more (Pinar, A., ...) (2024). Experimental Validation of a Command and Control Traffic Detection Model. IEEE Transactions on Dependable and Secure Computing, 21(3) 108097. 10.1109/TDSC.2023.3266139

Murtovi, A., Georgakoudis, G., Parasyris, K. and 3 more (Liao, C., Laguna, I., ...) (2024). Enhancing Performance Through Control-Flow Unmerging and Loop Unrolling on GPUs. CGO 2024 - Proceedings of the 2024 IEEE/ACM International Symposium on Code Generation and Optimization, 1018. 10.1109/CGO57630.2024.10444819

Stephany, R., Earls, C. (2024). Weak-PDE-LEARN: A Weak Form Based Approach to Discovering PDEs from Noisy, Limited Data. Journal of Computational Physics, 506. 10.1016/j.jcp.2024.112950

Magri, V.A.P., Lindstrom, P. (2024). A General Framework for Progressive Data Compression and Retrieval. IEEE Transactions on Visualization and Computer Graphics, 30(1) 135368. 10.1109/TVCG.2023.3327186

Feinglass, J., Thiagarajan, J.J., Anirudh, R. and 2 more (...) (2024). Eyes of a Hawk and Ears of a Fox: Part Prototype Network for Generalized Zero-Shot Learning. IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops, 779798. 10.1109/CVPRW63382.2024.00775

Buason, P., Misra, S., Watson, J.-P. and 1 more (...) (2024). Adaptive Power Flow Approximations with Second-Order Sensitivity Insights. IEEE Transactions on Power Systems. 10.1109/TPWRS.2024.3499899

Fu, G., Ji, H., Pazner, W. and 1 more (Li, G., ...) (2024). Mean Field Control of Droplet Dynamics with High-Order Finite-Element Computations. Journal of Fluid Mechanics, 999. 10.1017/jfm.2024.983

Leventhal, S., Gyulassy, A., Heimann, M. and 1 more (...) (2024). Exploring Classification of Topological Priors with Machine Learning for Feature Extraction. IEEE Transactions on Visualization and Computer Graphics, 30(7) 395972. 10.1109/TVCG.2023.3248632

Singh, A., Verma, N., Kant, S. and 3 more (Bhardwaj, K., ...) (2024). The Effects of Alpha Linolenic Acid (Omega-3 Fatty Acid) on Tobacco Craving Intensity, Withdrawal Symptoms and Biochemical Markers in Tobacco Users. Indian Journal of Clinical Biochemistry. 10.1007/s12291-024-01226-8

Cheung, S.W., Kushwaha, A., Sun, H. and 1 more (...) (2024). Stochastic Representation and Conditioning of Process-Based Geological Model by Deep Generative and Recognition Networks. Petroleum Geoscience, 30(3). 10.1144/petgeo2022-032

Yokelson, D., Lappi, O., Ramesh, S. and 7 more (...) (2024). SOMA: Observability, Monitoring, and In Situ Analytics for Exascale Applications. Concurrency and Computation: Practice and Experience, 36(19). 10.1002/cpe.8141

Hanke, L.I., Vradelis, L., Boedecker, C. and 12 more (Chheang, V., ...) (2024). Immersive Virtual Reality for Interdisciplinary Trauma Management – Initial Evaluation of a Training Tool Prototype. BMC Medical Education, 24(1). 10.1186/s12909-024-05764-w

Kuťák, D., Langlois, D., Rozič, R. and 4 more (Miao, H., ...) (2024). Design and Evaluation of Alphabetic and Numeric Input Methods for Virtual Reality. Computers and Graphics (Pergamon), 122. 10.1016/j.cag.2024.103955

Chung, S.W., Choi, Y., Roy, P. and 7 more (...) (2024). Train Small, Model Big: Scalable Physics Simulators via Reduced Order Modeling and Domain Decomposition. Computer Methods in Applied Mechanics and Engineering, 427. 10.1016/j.cma.2024.117041

Mehra, A., Zhang, Y., Kailkhura, B. and 1 more (...) (2024). On the Fly Neural Style Smoothing for Risk-Averse Domain Generalization. Proceedings - 2024 IEEE Winter Conference on Applications of Computer Vision, WACV 2024, 378799. 10.1109/WACV57701.2024.00376

Yee, H.C., Sjögreen, B. (2024). Numerical Dissipation Control in High-Order Methods for Compressible Turbulence: Recent Development. Fluids, 9(6). 10.3390/fluids9060127

Peterson, J.L., Bender, T., Blake, R. and 26 more (Chiang, N., Kustowski, B., Milovich, J., Gillette, A., Wang, J., ...) (2024). Toward Digital Design at the Exascale: An Overview of Project ICECap. Physics of Plasmas, 31(6). 10.1063/5.0205054

Bernholdt, D.E., Bosilca, G., Bouteiller, A. and 12 more (Georgakoudis, G., Laguna, I., ...) (2024). Taking the MPI Standard and the Open MPI Library to Exascale. International Journal of High Performance Computing Applications, 38(5) 4907. 10.1177/10943420241265936

Christopherson, A.R., Schlossberg, D., MacLaren, S. and 21 more ( Kustowski, B., Milovich, J., ...) (2024). Design and Analysis of Dudded Fuel Experiments at the National Ignition Facility. Physics of Plasmas, 31(7). 10.1063/5.0212668

Dzanic, T., Mittal, K., Kim, D. and 4 more (Petrides, S., ...) (2024). DynAMO: Multi-Agent Reinforcement Learning for Dynamic Anticipatory Mesh Optimization with Applications to Hyperbolic Conservation Laws. Journal of Computational Physics, 506. 10.1016/j.jcp.2024.112924

Xu, D., Colomés, O., Main, A. and 4 more (Atallah, N.M., ...) (2024). A Weighted Shifted Boundary Method for Immersed Moving Boundary Simulations of Stokes' Flow. Journal of Computational Physics, 510. 10.1016/j.jcp.2024.113095

Jeon, E.S., Choi, H., Buman, M.P. and 1 more (...) (2024). Role of Mixup in Topological Persistence Based Knowledge Distillation for Wearable Sensor Data. IEEE Sensors Journal. 10.1109/JSEN.2024.3517653

Li, Z., Liu, S., Yu, X. and 5 more (Diffenderfer, J., Bremer, P.-T., ...) (2024). Understanding Robustness Lottery: A Geometric Visual Comparative Analysis of Neural Network Pruning Approaches. IEEE Transactions on Visualization and Computer Graphics. 10.1109/TVCG.2024.3514996

Peng, I., Wahlgren, J., Youssef, K. and 3 more (Iwabuchi, K., Pearce, R., Gokhale, M., ...) (2024). UMap: An Application-Oriented User Level Memory Mapping Library. International Journal of High Performance Computing Applications. 10.1177/10943420241303145

Mittal, K., Dobrev, V.A., Knupp, P. and 4 more (Kolev, T., Tomov, V.Z., ...) (2024). Mixed-Order Meshes through rp-Adaptivity for Surface Fitting to Implicit Geometries. 2024 International Meshing Roundtable, IMR 2024, 1131.

Dzanic, T. (2024). A Note on Higher-Order and Nonlinear Limiting Approaches for Continuously Bounds-Preserving Discontinuous Galerkin Methods. Journal of Computational Physics, 516. 10.1016/j.jcp.2024.113367

Yokelson, D., Titov, M., Ramesh, S. and 4 more (...) (2024). Enabling Performance Observability for Heterogeneous HPC Workflows with SOMA. ACM International Conference Proceeding Series, 2230. 10.1145/3673038.3673100

Yee, H.C., Sweby, P.K., Sjögreen, B. and 1 more (...) (2024). A Nonlinear Approach in the Quantification of Numerical Uncertainty by High-Order Methods for Compressible Turbulence with Shocks. Fluids, 9(11). 10.3390/fluids9110250

Duan, J., Wang, S., Diffenderfer, J. and 4 more (Sun, L., Kailkhura, B., ...) (2024). ReTA: Recursively Thinking Ahead to Improve the Strategic Reasoning of Large Language Models. Proceedings of the 2024 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, NAACL 2024, 1223246. -

Dahshan, M., Polys, N.F., House, L. and 2 more (Youssef, K., ...) (2024). Human-Machine Collaboration for the Visual Exploration and Analysis of High-Dimensional Spatial Simulation Ensembles. Proceedings of the International Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications, 16789. 10.5220/0012405100003660

Ho, Y., Carbajal, A., Escamilla, L. and 1 more (Pinar, A., ...) (2024). Neuromorphic Monte Carlo Tree Search Methods for Shortest Path Interdiction. Proceedings - 2024 International Conference on Neuromorphic Systems, ICONS 2024, 3011. 10.1109/ICONS62911.2024.00053

Mariscal, D.A., Djordjevic, B.Z., Anirudh, R. and 28 more (Li, G., Sarkar, A., Van Essen, B., Bremer, P.-T., Liu, S., Hill, M., ...) (2024). Toward Machine-Learning-Assisted PW-Class High-Repetition-Rate Experiments with Solid Targets. Physics of Plasmas, 31(7). 10.1063/5.0190553

Hossen, M.R., Sochat, V., Sarkar, A. and 2 more (Milroy D., ...) (2024). Enabling Workload-Driven Elasticity in MPI-based Ensembles. Proceedings - IEEE International Conference on Cluster Computing, ICCC, 2562. 10.1109/CLUSTER59578.2024.00029

Miao, D., Laguna, I., Georgakoudis, G. and 2 more (Parasyris, K., ...) (2024). An Automated OpenMP Mutation Testing Framework for Performance Optimization. Parallel Computing, 121. 10.1016/j.parco.2024.103097

Duan, J., Cheng, H., Wang, S. and 5 more (Wang, C., Kailkhura, B., ...) (2024). Shifting Attention to Relevance: Towards the Predictive Uncertainty Quantification of Free-Form Large Language Models. Proceedings of the Annual Meeting of the Association for Computational Linguistics, 1505063.

Sochat, V., Milroy, D., Misale, C. and 3 more (...) (2024). Converged Computing: A Best of Both Worlds of High-Performance Computing and Cloud. Computing in Science and Engineering, 26(3). 10.1109/MCSE.2024.3489732

Vogman, G.V., Hammer, J.H. (2024). Complete Quasilinear Model for the Acceleration-Driven Lower Hybrid Drift Instability and a Computational Assessment of Its Validity. Physical Review E, 110(2). 10.1103/PhysRevE.110.025201

Beyer, J., Frey, S., Reina, G. and 10 more (Bremer, P.-T., Wang, C., ...) (2024). IEEE LDAV 2024 Preface. Proceedings: 2024 IEEE 14th Symposium on Large Data Analysis and Visualization, LDAV 2024. 10.1109/LDAV64567.2024.00005

Ricketson, L.F., Chacón, L. (2024). Asymptotic-Preserving Gyrokinetic Implicit Particle-Orbit Integrator for Arbitrary Electromagnetic Fields. Journal of Computational Physics, 513. 10.1016/j.jcp.2024.113136

Christensen, A.B., Kunen, A., Loffeld, J. and 2 more (Brown, P., ...) (2024). A Conservative First-Collision Source Treatment for Ray Effect Mitigation in Discrete-Ordinate Radiation Transport Solutions. Journal of Computational Physics, 509. 10.1016/j.jcp.2024.113049

Tekriwal, M., Tachna-Fram, A., Jeannin, J.-B. and 2 more (...) (2024). Formally Verified Asymptotic Consensus in Robust Networks. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 145702467. 10.1007/978-3-031-57246-3_14

Ivanov, I.R., Domke, J., Endo, T. and 1 more (Doerfert, J., ...) (2024). Automatic Parallelization and OpenMP Offloading of Fortran Array Notation. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 151951909. 10.1007/978-3-031-72567-8_13

Wan, Q., Cheung, S.W., Choe, Y. (2024). AdjointBackMapV2: Precise Reconstruction of Arbitrary CNN Unit's Activation via Adjoint Operators. Neural Networks, 17051. 10.1016/j.neunet.2023.11.009

Loffeld, J.J., Nonaka, A., Reynolds, D.R. and 2 more (Gardner, D., Woodward, C.S., ...) (2024). Performance of Explicit and IMEX MRI Multirate Methods on Complex Reactive Flow Problems within Modern Parallel Adaptive Structured Grid Frameworks. International Journal of High Performance Computing Applications, 38(4) 2681. 10.1177/10943420241227914

Scully-Allison, C., Lumsden, I., Williams, K. and 6 more (Brink, S., Pearce, O., ...) (2024). Design Concerns for Integrated Scripting and Interactive Visualization in Notebook Environments. IEEE Transactions on Visualization and Computer Graphics, 30(9) 657585. 10.1109/TVCG.2024.3354561

Shum, J.G., Lee, S., Salari, K. and 1 more (...) (2024). Effect of Particle Impact-Induced Surface Roughness on Dynamic Stall Using Delayed Detached Eddy Simulations. AIAA Aviation Forum and ASCEND, 2024. 10.2514/6.2024-4477

Georgouli, K., Stephany, R.R., Tempkin, J.O.B. and 12 more (Santiago, C., Heimann, M., Pottier, L., Hsu, T., Bremer, P.-T., ...) (2024). Generating Protein Structures for Pathway Discovery Using Deep Learning. Journal of Chemical Theory and Computation. 10.1021/acs.jctc.4c00816

Taufer, M., Milroy, D., Gamblin, T. and 3 more (...) (2024). HPC and Cloud Convergence Beyond Technical Boundaries: Strategies for Economic Sustainability, Standardization, and Data Accessibility. Computer, 57(6) 1236. 10.1109/MC.2024.3387013

Sun, H., Hamel, S., Hsu, T. and 3 more (...) (2024). Ice Phase Classification Made Easy with Score-Based Denoising. Journal of Chemical Information and Modeling, 64(16) 636376. 10.1021/acs.jcim.4c00822

Hsu, C.-C., Huang, C.-L., Lee, C.-L. and 2 more (Lin, P.-H....) (2024). The Rewriting of DataRaceBench Benchmark for OpenCL Program Validations. ACM International Conference Proceeding Series, 12. 10.1145/3677333.3678148

Devarajan, H., Mohror, K. (2024). TailorFS: An Adaptive File System to Support Dynamic I/O requirements of HPC Workloads. Proceedings - Symposium on Computer Architecture and High Performance Computing, 82. 10.1109/SBAC-PAD63648.2024.00016

Perin, G.J., Chen, X., Liu, S., and 3 more (Kailkhura, B., Gallagher, B., ...) (2024). RankMean: Module-Level Importance Score for Merging Fine-tuned Large Language Models. Proceedings of the Annual Meeting of the Association for Computational Linguistics, 177782. -

Ammari, B.L., Bugosen, S., Watson, J.-P. and 2 more (...) (2024). Progressive for Optimization of Tree Ensembles as Objective Functions. Computer Aided Chemical Engineering, 53329300. 10.1016/B978-0-443-28824-1.50550-0

Homerding, B., Vargas, A., Scogland, T. and 3 more (Hornung, R., ...) (2024). Enabling RAJA on Intel GPUs with SYCL. ACM International Conference Proceeding Series. 10.1145/3648115.3648131

Jarmusch, A., Cabarcas, F., Pophale, S. and 6 more (Doerfert, J., ...) (2024). CI/CD Efforts for Validation, Verification and Benchmarking OpenMP Implementations. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 151951125. 10.1007/978-3-031-72567-8_8

Hanke, L., Schulte, R., Boedecker, C. and 9 more (Chheang, V., ...) (2024). Influence of Distraction Factors on Performance in Laparoscopic Surgery in Immersive Virtual Reality: Study Protocol of a Cross-Over Trial in Medical Students and Residents—DisLapVR. JMIR Research Protocols, 13. 10.2196/59014

Tanade, C., Khan, N.S., Rakestraw, E. and 3 more (Draeger, E., ...) (2024). Establishing the Longitudinal Hemodynamic Mapping Framework for Wearable-Driven Coronary Digital Twins. Digital Medicine, 7(1). 10.1038/s41746-024-01216-3

Duswald, T., Keith, B., Lazarov, B. and 2 more (Petrides, S., ...) (2024). Finite Elements for Matérn-Type Random Fields: Uncertainty in Computational Mechanics and Design Optimization. Computer Methods in Applied Mechanics and Engineering, 429. 10.1016/j.cma.2024.117146

Hong, J., Duan, J., Zhang, C. and 12 more (Diffenderfer, J., Kailkhura, B., ...) (2024). Decoding Compressed Trust: Scrutinizing the Trustworthiness of Efficient LLMs Under Compression. Proceedings of Machine Learning Research, 23518618633.

Tran, A., Laguna, I., Gopalakrishnan, G. (2024). FPBOXer: Efficient Input-Generation for Targeting Floating-Point Exceptions in GPU Programs. HPDC 2024 - Proceedings of the 33rd International Symposium on High-Performance Parallel and Distributed Computing, 83. 10.1145/3625549.3658660

Gaffney, J.A., Humbird, K., Kritcher, A. and 5 more ( Kustowski, B., ...) (2024). Data-Driven Prediction of Scaling and Ignition of Inertial Confinement Fusion Experiments. Physics of Plasmas, 31(9). 10.1063/5.0215962

Blommel, T., Gardner, D.J., Woodward, C.S. and 1 more (...) (2024). Adaptive Time Stepping for the Two-Time Integro-Differential Kadanoff–Baym Equations. Physical Review B, 110(20). 10.1103/PhysRevB.110.205134

Abdelfattah, A., Beams, N., Carson, R. and 6 more (Kolev, T., ...) (2024). MAGMA: Enabling Exascale Performance with Accelerated BLAS and LAPACK for Diverse GPU Architectures. International Journal of High Performance Computing Applications, 38(5) 468–490. 10.1177/10943420241261960

Biros, G., Li, S., Ltaief, H. and 4 more (Yang, U.M....) (2024). Proceedings of the 2022 SIAM Conference on Parallel Processing for Scientific Computing Preface. 2024 SIAM Conference on Parallel Processing for Scientific Computing, PP 2024.

Devarajan, H., Lumsden, I., Wang, C. and 4 more (Scogland, T., Yeom, J.-S., ...) (2024). DYAD: Locality-Aware Data Management for Accelerating Deep Learning Training. Proceedings - Symposium on Computer Architecture and High Performance Computing, 13–24. 10.1109/SBAC-PAD63648.2024.00010

Elis, B., Boehme, D., Pearce, O. and 1 more (...) (2024). A Mechanism to Generate Interception Based Tools for HPC Libraries. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 14801107–120. 10.1007/978-3-031-69577-3_8

Fang, B., Li, X., Dam, H. and 9 more (Laguna, I., ...) (2024). Understanding Mixed Precision GEMM with MPGemmFI: Insights into Fault Resilience. Proceedings: IEEE International Conference on Cluster Computing, ICCC, 166–178. 10.1109/CLUSTER59578.2024.00022

Cai, L.T., Moon, J., Camacho, P.B. and 11 more (Bremer, P.-T., ...) (2024). MaPPeRTrac: A Massively Parallel, Portable, and Reproducible Tractography Pipeline. Neuroinformatics, 22(2) 177–191. 10.1007/s12021-024-09650-0

Nguyen, C., Curtis, J., Salari, K. (2024). Exploring the Regimes of Particle Behavior upon Impact via the Discrete Element Method. Pharmaceutics, 16(6). 10.3390/pharmaceutics16060727

Piansky, R., Stinchfield, G., Kody, A. and 2 more (Watson, J.-P., ...) (2024). Long Duration Battery Sizing, Siting, and Operation under Wildfire Risk using Progressive Hedging. Electric Power Systems Research, 235. 10.1016/j.epsr.2024.110785

Jeon, E.S., Choi, H., Shukla, A. and 4 more (...) (2024). Robustness of Topological Persistence in Knowledge Distillation for Wearable Sensor Data. EPJ Data Science, 13(1). 10.1140/epjds/s13688-024-00512-y

Schieffer, G., De Medeiros, D.A., Faj, J. and 2 more (Marathe, A., ...) (2024). On the Rise of AMD Matrix Cores: Performance, Power Efficiency, and Programmability. Proceedings - 2024 IEEE International Symposium on Performance Analysis of Systems and Software, ISPASS 2024, 132–143. 10.1109/ISPASS61541.2024.00022

Heroux, M.A., McInnes, L.C., Ahrens, J. and 9 more (Mohror, K., ...) (2024). ECP Libraries and Tools: An Overview. International Journal of High Performance Computing Applications, 38(5) 381–408. 10.1177/10943420241271005

Jefferson, D., Barnes, P.D. (2024). Virtual Time III, Part 3: Throttling and Message Cancellation. ACM Transactions on Modeling and Computer Simulation, 34(4). 10.1145/3678173

Draeger, E.W., Siegel, A., Gottlieb, S. (2024). The Scientific Impact of the Exascale Computing Project. Computing in Science and Engineering, 26(2) 4–6. 10.1109/MCSE.2024.3437608

Cooper, B., Scogland, T.R.W., Ge, R. (2024). Shared Virtual Memory: Its Design and Performance Implications for Diverse Applications. Proceedings of the International Conference on Supercomputing, 26–37. 10.1145/3650200.3656608

Chen, X., Chen, T., Olivares, E.Y. and 7 more (Kailkhura, B., Gallagher, B., ...) (2024). Cross-Quality Few-Shot Transfer for Alloy Yield Strength Prediction: A New Materials Science Benchmark and A Sparsity-Oriented Optimization Framework. Proceedings of Machine Learning Research, 234302–323.

Gorka, J., Hsu, T., Li, W. and 2 more (...) (2024). Cascading Blackout Severity Prediction with Statistically Augmented Graph Neural Networks. Electric Power Systems Research, 234. 10.1016/j.epsr.2024.110738

MacLaren, S.A., Milovich, J.L., Fratanduono, D.E. and 5 more (...) (2024). Indirect Drive ICF Design Study for a 3 MJ NIF Enhanced Yield Capability. High Energy Density Physics, 52. 10.1016/j.hedp.2024.101134

Sottile, M., Tekriwal, M. (2024). Design and Implementation of a Verified Interpreter for Additive Manufacturing Programs (Experience Report). FUNARCH 2024 - Proceedings of the 2nd ACM SIGPLAN International Workshop on Functional Software Architecture, Co-located with: ICFP 2024, 10–17. 10.1145/3677998.3678221

Trojak, W., Dzanic, T. (2024). Positivity-Preserving Discontinuous Spectral Element Methods for Compressible Multi-Species Flows. Computers and Fluids, 280. 10.1016/j.compfluid.2024.106343

Lumsden, I., Devarajan, H., Marquez, J. and 5 more (Brink, S., Boehme, D., Pearce, O., Yeom, J.-S., ...) (2024). Empirical Study of Molecular Dynamics Workflow Data Movement: DYAD vs. Traditional I/O Systems. 2024 IEEE International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2024, 543–553. 10.1109/IPDPSW63119.2024.00111

Hoang, D., Bhatia, H., Lindstrom, P. and 1 more (...) (2024). Progressive Tree-Based Compression of Large-Scale Particle Data. IEEE Transactions on Visualization and Computer Graphics, 30(7) 4321–4338. 10.1109/TVCG.2023.3260628

Kim, H., Shim, H., Ranganath, A. and 3 more (...) (2024). Protein-Ligand Binding Affinity Prediction using Multi-Instance Learning with Docking Structures. Frontiers in Pharmacology, 15. 10.3389/fphar.2024.1518875

Stinchfield, G., Watson, J.-P., Laird, C.D. (2024). Progressive Hedging Decomposition for Solutions of Large-Scale Process Family Design Problems. Computer Aided Chemical Engineering, 531285–1290. 10.1016/B978-0-443-28824-1.50215-5

Green, D., Hu, X., Lore, J. and 2 more (Stowell, M.L., ...) (2024). An Efficient High-Order Solver for Diffusion Equations with Strong Anisotropy on Non-Anisotropy-Aligned Meshes. SIAM Journal on Scientific Computing, 46(2) S199-S222. 10.1137/22M1500162

Banday, B.H., Islam, T.Z., Marathe, A. (2024). PERFGEN: A Synthesis and Evaluation Framework for Performance Data using Generative AI. Proceedings - 2024 IEEE 48th Annual Computers, Software, and Applications Conference, COMPSAC 2024, 188–197. 10.1109/COMPSAC61105.2024.00035

Chen, H., Woods, D.T., Lemos, N. and 20 more (Milovich, J., Masters, N., ...) (2024). Measurement of Early Time Outer Laser Beam Reflection Inside a Cylindrical Hohlraum at the National Ignition Facility. Physics of Plasmas, 31(6). 10.1063/5.0201962

Yi, X., Wang, A., Yan, Y. and 1 more (Liao, C., ...) (2024). Developing an Interactive OpenMP Programming Book with Large Language Models. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 15195176–194. 10.1007/978-3-031-72567-8_12

Chaudhari, A., Lokesh, R., Chheang, V. and 4 more (...) (2024). Characterizing the Sensing Response of Carbon Nanocomposite-Based Wearable Sensors on Elbow Joint Using an End Point Robot and Virtual Reality. Sensors, 24(15). 10.3390/s24154894

Geyko, V.I., Joseph, I., Dorf, M.A. and 2 more (Ghosh, D., Dorr, M. R., ...) (2024). Drift Kinetic Electrostatic Simulations of the Edge Localized Mode Heat Pulse. Physics of Plasmas, 31(12). 10.1063/5.0230913

Kogiou, O., Devarajan, H., Wang, C. and 2 more (Mohror, K., ...) (2024). Understanding Highly Configurable Storage for Diverse Workloads. Proceedings - 2024 IEEE International Conference on Cluster Computing Workshops, CLUSTER Workshops 2024, 96–103. 10.1109/CLUSTERWorkshops61563.2024.00023

Valencia Zuluaga, T., Musselman, A., Watson, J.-P. and 1 more (...) (2024). Parallel Computing for Power System Climate Resiliency: Solving a Large-Scale Stochastic Capacity Expansion Problem with mpi-sppy. Electric Power Systems Research, 235. 10.1016/j.epsr.2024.110720

Thiagarajan, J.J., Narayanaswamy, V., Trivedi, P. and 1 more (...) (2024). PAGER: Accurate Failure Characterization in Deep Regression Models. Proceedings of Machine Learning Research, 23521069–21082.

Bolet, G., Georgakoudis, G., Parasyris, K. and 3 more (Beckingsale, D., ...) (2024). An Exploration of Global Optimization Strategies for Autotuning OpenMP-based Codes. 2024 IEEE International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2024, 741–750. 10.1109/IPDPSW63119.2024.00138

Chheang, V., Weston, B.T., Cerda, R.W. and 4 more (Bremer, P.-T., Miao, H., ...) (2024). A Virtual Environment for Collaborative Inspection in Additive Manufacturing. Conference on Human Factors in Computing Systems – Proceedings. 10.1145/3613905.3650730

Devarajan, H., Heber, G., Mohror, K. (2024). H5Intent: Autotuning HDF5 with User Intent. IEEE Transactions on Parallel and Distributed Systems. 10.1109/TPDS.2024.3492704

Angus, J.R., Farmer, W., Friedman, A. and 5 more (Ghosh, D., ...) (2024). An Implicit Particle Code with Exact Energy and Charge Conservation for Studies of Dense Plasmas in Axisymmetric Geometries. Journal of Computational Physics, 519. 10.1016/j.jcp.2024.113427

Jeong, S., Li, J., Johnson, C.R. and 2 more (Liu, S., ...) (2024). Text-Based Transfer Function Design for Semantic Volume Rendering. Proceedings - 2024 IEEE Visualization Conference - Short Papers, VIS 2024, 196–200. 10.1109/VIS55277.2024.00047

Dobrev, V.A., Knupp, P., Kolev, T. and 4 more (Mittal, K., Tomov, V.Z., ...) (2024). Asymptotic Analysis of Compound Volume+Shape Metrics for Mesh Optimization. 2024 International Meshing Roundtable, IMR 2024, 106–117. -

Tramm, J., Romano, P., Shriwise, P. and 5 more (Doerfert, J., ...) (2024). Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs. EPJ Web of Conferences, 302. 10.1051/epjconf/202430204010

Baumann, Y., Ben-Nun, T., Besta, M. and 3 more (...) (2024). Low-Depth Spatial Tree Algorithms. Proceedings - 2024 IEEE International Parallel and Distributed Processing Symposium, IPDPS 2024, 180–192. 10.1109/IPDPS57955.2024.00024

Fink, Z., Parasyris, K., Rathi, P. and 3 more (Georgakoudis, G., Menon, H., Bremer, P.-T., ...) (2024). HPAC-ML: A Programming Model for Embedding ML Surrogates in Scientific Applications. International Conference for High Performance Computing, Networking, Storage and Analysis, SC. 10.1109/SC41406.2024.00078

Mittal, K., Zhang, J., Mitchell, S. (2024). 2024 International Meshing Roundtable (IMR24). 2024 International Meshing Roundtable, IMR 2024.

Martin, A., Liu, G., Joo, B. and 4 more (Draeger, E.W., ...) (2024). Designing a GPU-Accelerated Communication Layer for Efficient Fluid-Structure Interaction Computations on Heterogeneous Systems. International Conference for High Performance Computing, Networking, Storage and Analysis, SC. 10.1109/SC41406.2024.00099

Huang, X., Miao, H., Townsend, A. and 4 more (Bremer, P.-T., ...) (2024). Bimodal Visualization of Industrial X-Ray and Neutron Computed Tomography Data. IEEE Transactions on Visualization and Computer Graphics, 1–15. 10.1109/TVCG.2024.3382607

Markidis, S., Gokhale, M., Peng, I. (2024). Message from the ICPP'24 Chairs. ACM International Conference Proceeding Series.

Dzanic, T., Martinelli, L. (2024). Direct Molecular Gas Dynamics Simulations of Re-entry Vehicles via the Boltzmann Equation. AIAA SciTech Forum and Exposition, 2024. 10.2514/6.2024-2726

Izumi, N., Higginson, D.P., Rosen, M.D. and 33 more (Masters, N., ...) (2024). Neutron Imaging of the Deuterium-Tritium Tamping Gas Volume in an Inertial Confinement Fusion Hohlraum. Review of Scientific Instruments, 95(10). 10.1063/5.0219564

Soper, B.C., Miller, C.J., Merl, D.M. (2024). Linearly Solvable General-Sum Markov Games. 2024 60th Annual Allerton Conference on Communication, Control, and Computing, Allerton 2024. 10.1109/Allerton63246.2024.10735323

Pazner, W., Kolev, T., Vassilevski, P.S. (2024). Matrix-Free High-Performance Saddle-Point Solvers for High-Order Problems in h(div). SIAM Journal on Scientific Computing, 46(3) B179-B204. 10.1137/23M1568806

Glista, E., Watson, J.-P. (2024). Electricity Grid Capacity Expansion Planning Considering Interconnection Queue Uncertainty. PMAPS 2024: 18th International Conference on Probabilistic Methods Applied to Power Systems. 10.1109/PMAPS61648.2024.10667148

Berger, M., Liu, S. (2024). The Visualization JUDGE: Can Multimodal Foundation Models Guide Visualization Design Through Visual Perception?. Proceedings - 2024 IEEE Evaluation and Beyond - Methodological Approaches for Visualization, BELIV 2024, 60–70. 10.1109/BELIV64461.2024.00012

Li, X., Li, A., Fang, B. and 3 more (Laguna, I., ...) (2024). Discovery of Floating-Point Differences Between NVIDIA and AMD GPUs. Proceedings - 2024 IEEE 24th International Symposium on Cluster, Cloud and Internet Computing, CCGrid 2024, 663–666. 10.1109/CCGrid59990.2024.00083

Huber, T., Huettl, F., Vradelis, L. and 10 more (Chheang, V., ...) (2024). Virtual Reality in der Leberchirurgie – Planen, Weiterbilden, Prüfen. Chirurgie (Germany). 10.1007/s00104-024-02216-5

Trivedi, P., Heimann, M., Anirudh, R. and 2 more (...) (2024). Accurate and Scalable Estimation of Epistemic Uncertainty for Graph Neural Networks. 12th International Conference on Learning Representations, ICLR 2024.

Schnake, S., Kendrick, C., Endeve, E. and 6 more (...) (2024). Sparse-Grid Discontinuous Galerkin Methods for the Vlasov–Poisson–Lenard–Bernstein Model. Journal of Computational Physics, 510. 10.1016/j.jcp.2024.113053

Hückelheim, J., Menon, H., Moses, W. and 3 more (...) (2024). A Taxonomy of Automatic Differentiation Pitfalls. Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery, 14(6). 10.1002/widm.1555

Cheung, S.W., Choi, Y., Springer, H.K. and 1 more (...) (2024). Data-Scarce Modeling of Shock-Induced Pore Collapse Process. Shock Waves, 34(3) 237–256. 10.1007/s00193-024-01177-2

Reddy, S. (2024). Identifiability and Characterization of Transmon Qutrits through Bayesian Experimental Design. Journal of Applied Physics, 135(22). 10.1063/5.0204435

Kadeethum, T., O’Malley, D., Choi, Y. and 2 more (...) (2024). Progressive Transfer Learning for Advancing Machine-Learning-Based Reduced-Order Modeling. Scientific Reports, 14(1). 10.1038/s41598-024-64778-y

Tekriwal, M., Miller, J., Jeannin, J.-B. (2024). Formalization of Asymptotic Convergence for Stationary Iterative Methods. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 1462737–56. 10.1007/978-3-031-60698-4_3

Bhattacharjee, K., Kundu, S., Chakraborty, I. and 1 more (...) (2024). Forte: An Interactive Visual Analytic Tool for Trust-Augmented Net Load Forecasting. 2024 IEEE Power and Energy Society Innovative Smart Grid Technologies Conference, ISGT 2024. 10.1109/ISGT59692.2024.10454191

Olson, M.L., Liu, S., Thiagarajan, J.J. and 3 more ( Kustowski, B., ...) (2024). Transformer-Powered Surrogates Close the ICF Simulation-Experiment Gap with Extremely Limited Data. Machine Learning: Science and Technology, 5(2). 10.1088/2632-2153/ad4e03

Devarajan, H., Moody, A., Dai, D. and 6 more (Mohror, K., ...) (2024). The Impact of Asynchronous I/O in Checkpoint-Restart Workloads. 2024 IEEE International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2024, 397–405. 10.1109/IPDPSW63119.2024.00089

Vogl, C.J., Atkins, Z.R., Fox, A. and 2 more (Ponce, C., ...) (2024). Modifying the Asynchronous Jacobi Method for Data Corruption Resilience. SIAM Journal on Scientific Computing, 46(5) A3258-A3281. 10.1137/23M1605648

Kim, Y., Choi, Y., Yoo, B. (2024). Gappy AE: A Nonlinear Approach for Gappy Data Reconstruction using Auto-Encoder. Computer Methods in Applied Mechanics and Engineering, 426. 10.1016/j.cma.2024.116978

Li, M., Jeong, S., Liu, S. and 1 more (...) (2024). CAN: Concept-Aligned Neurons for Visual Comparison of Deep Neural Network Models. Computer Graphics Forum, 43(3). 10.1111/cgf.15085

Dzanic, T., Witherden, F.D., Martinelli, L. (2024). Validation of wall boundary conditions for simulating complex fluid flows via the Boltzmann equation: Momentum transport and skin friction. Physics of Fluids, 36(1). 10.1063/5.0186037

Olivier, S., Haut, T.S. (2024). High-Order Finite Element Second Moment Methods for Linear Transport. Nuclear Science and Engineering, 198(6) 1179–1214. 10.1080/00295639.2023.2238171

Thopalli, K., Meniconi, N., Ahmed, T. and 4 more (...) (2024). Advances in Computer Vision for Home-Based Stroke Rehabilitation. Computer Vision: Challenges, Trends, and Opportunities, 109–127. 10.1201/9781003328957-6

Sekender, N., Lin, P.-H., Liao, C. (2024). Finding Equivalent OpenMP Fortran and C/C++ Code Snippets Using Large Language Models. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 15195143–160. 10.1007/978-3-031-72567-8_10

Kesavan, S.P., Bhatia, H., Dasu, K. and 2 more (Pearce, O., ...) (2024). Data Movement Visualized: A Unified Framework for Tracking and Visualizing Data Movements in Heterogeneous Architectures. IEEE Pacific Visualization Symposium, 32–41. 10.1109/PacificVis60374.2024.00013

Stathopoulos, A., Benzi, M., Cai, X.-C. and 18 more (Sanders, G., Woodward, C., ...) (2024). Special Section: 2022 Copper Mountain Conference on Iterative Methods. SIAM Journal on Scientific Computing, 46(2). 10.1137/23M1614110

Dey, A., Dhakal, A., Islam, T.Z. and 5 more (Yeom, J.-S., Patki, T., ...) (2024). Relative Performance Prediction Using Few-Shot Learning. Proceedings - 2024 IEEE 48th Annual Computers, Software, and Applications Conference, COMPSAC 2024, 1764–1769. 10.1109/COMPSAC61105.2024.00278

Chheang, V., Narain, S., Hooten, G. and 6 more Weston, B., Bremer, P.-T., Miao, H., ...) (2024). Enabling Additive Manufacturing Part Inspection of Digital Twins via Collaborative Virtual Reality. Scientific Reports, 14(1). 10.1038/s41598-024-80541-9

Miao, D., Laguna, I., Rubio-González, C. (2024). Input Range Generation for Compiler-Induced Numerical Inconsistencies. Proceedings of the International Conference on Supercomputing, 201–212. 10.1145/3650200.3656618

Li, Z., Menon, H., Mohror, K. and 4 more (Liu, S., Bremer, P.-T., ...) (2024). A Visual Comparison of Silent Error Propagation. IEEE Transactions on Visualization and Computer Graphics, 30(7) 3268–3282. 10.1109/TVCG.2022.3230636

Atallah, N.M., Tomov, V.Z., Scovazzi, G. (2024). Weak Boundary Conditions for Lagrangian Shock Hydrodynamics: A High-Order Finite Element Implementation on Curved Boundaries. Journal of Computational Physics, 507. 10.1016/j.jcp.2024.112959

Sundar, K., Mastin, A., Garcia, M. and 2 more (Watson, J.-P., ...) (2024). Exact and Heuristic Approaches for the Stochastic N-k Interdiction in Power Grids. PMAPS 2024: 18th International Conference on Probabilistic Methods Applied to Power Systems. 10.1109/PMAPS61648.2024.10667269

Fu, X., Meng, S., Zhang, W. and 6 more (Laguna, I., ...) (2024). Distributed Order Recording Techniques for Efficient Record-and-Replay of Multi-Threaded Programs. Proceedings - IEEE International Conference on Cluster Computing, ICCC, 27–38. 10.1109/CLUSTER59578.2024.00010

Nichols, D., Movsesyan, A., Yeom, J.-S. and 4 more (Sarkar, A., Milroy, D., Patki, T., ...) (2024). Predicting Cross-Architecture Performance of Parallel Programs. Proceedings - 2024 IEEE International Parallel and Distributed Processing Symposium, IPDPS 2024, 570–581. 10.1109/IPDPS57955.2024.00057

Wahlgren, J., Schieffer, G., Gokhale, M. and 2 more (Pearce, R., ...) (2024). Disaggregated Memory with SmartNIC Offloading: A Case Study on Graph Processing. Proceedings - Symposium on Computer Architecture and High Performance Computing, 159–169. 10.1109/SBAC-PAD63648.2024.00022

Nichols, D., Menon, H., Gamblin, T. and 1 more (...) (2024). A Probabilistic Approach to Selecting Build Configurations in Package Managers. International Conference for High Performance Computing, Networking, Storage and Analysis, SC. 10.1109/SC41406.2024.00090

Li, X., Li, A., Fang, B. and 3 more (Laguna, I., ...) (2024). FTTN: Feature-Targeted Testing for Numerical Properties of NVIDIA & AMD Matrix Accelerators. Proceedings - 2024 IEEE 24th International Symposium on Cluster, Cloud and Internet Computing, CCGrid 2024, 39–46. 10.1109/CCGrid59990.2024.00014

Reddy, S., Günther, S., Cho, Y. (2024). Data-Driven Characterization of Latent Dynamics on Quantum Testbeds. AVS Quantum Science, 6(3). 10.1116/5.0204409

Oehmen, C.S., Peles, S., Swirydowicz, K. and 5 more (Petra, C.G., ...) (2024). Advanced Computing is at the Forefront of a New 'Moonshot' Revolutionizing the North American Power Grid. Computing in Science and Engineering, 26(2) 25–32. 10.1109/MCSE.2024.3403029

Feng, W.-C., Cui, X., Scogland, T. and 1 more (...) (2024). BLP: Block-Level Pipelining for GPUs. Proceedings of the 21st ACM International Conference on Computing Frontiers, CF 2024, 97–105. 10.1145/3649153.3649214

Alsup, T., Hartland, T., Peherstorfer, B. and 1 more (...) (2024). Further Analysis of Multilevel Stein Variational Gradient Descent with an Application to the Bayesian Inference of Glacier Ice Models. Advances in Computational Mathematics, 50(4). 10.1007/s10444-024-10153-4

Park, J.S.R., Cheung, S.W., Choi, Y. and 1 more (...) (2024). tLaSDI: Thermodynamics-Informed Latent Space Dynamics Identification. Computer Methods in Applied Mechanics and Engineering, 429. 10.1016/j.cma.2024.117144

Kamath, C. (2024). Classification of Orbits in Poincaré Maps Using Machine Learning. International Journal of Data Science and Analytics, 17(3) 305–321. 10.1007/s41060-022-00368-3

Dorf, M., Dorr, M., Ghosh, D. (2024). Development of an Implicit Electromagnetic Capability for a Hybrid Gyrokinetic Ion-Fluid Electron Model. Contributions to Plasma Physics, 64(7–8). 10.1002/ctpp.202300114

Alger, N., Hartland, T., Petra, N. and 1 more (...) (2024). Point Spread Function Approximation of High-Rank Hessians with Locally Supported Nonnegative Integral Kernels. SIAM Journal on Scientific Computing, 46(3) A1658-A1689. 10.1137/23M1584745

Hartouni, E.P., Moore, A.S., Crilly, A.J. and 28 more (Milovich, J.L.) (2023). (2023). Evidence for suprathermal ion distribution in burning plasmas. Nature Physics, 19(1) 72–77 10.1038/s41567-022-01809-3

Kuťák, D., Vázquez, P.-P., Isenberg, T. and 5 more (Miao, H.) (2023). State of the Art of Molecular Visualization in Immersive Virtual Environments. Computer Graphics Forum, 42(6) 10.1111/cgf.14738

Narayanaswamy, V., Ayyanar, R., Tepedelenlioglu, C. and 2 more (...) (2023). Optimizing Solar Power Using Array Topology Reconfiguration With Regularized Deep Neural Networks. IEEE Access, 117461–7470 10.1109/ACCESS.2023.3238400

Ingólfsson, H.I., Bhatia, H., Aydin, F. and 28 more (Van Essen, B.) (2023). Machine Learning-Driven Multiscale Modeling: Bridging the Scales with a Next-Generation Simulation Infrastructure. Journal of Chemical Theory and Computation, 19(9) 2658–2675 10.1021/acs.jctc.2c01018

Huhn, Q.A., Tano, M.E., Ragusa, J.C., Choi, Y. (2023). Parametric dynamic mode decomposition for reduced order modeling. Journal of Computational Physics, 475 10.1016/j.jcp.2022.111852

Karargyris, A., Umeton, R., Sheller, M.J. and 71 more (Thiagarajan, J.) (2023). Federated benchmarking of medical artificial intelligence with MedPerf. Nature Machine Intelligence, 5(7) 799–810 10.1038/s42256-023-00652-2

Anirudh, R., Archibald, R., Asif, M.S. and 60 more (Bremer, P.-T., Gaffney, J.A., Thiagarajan, J., Van Essen, B.) (2023). 2022 Review of Data-Driven Plasma Science. IEEE Transactions on Plasma Science, 51(7) 1750–1838 10.1109/TPS.2023.3268170

Liu, Y., Ponce, C., Brunton, S.L. and 1 more (...) (2023). Multiresolution convolutional autoencoders. Journal of Computational Physics, 474 10.1016/j.jcp.2022.111801

Huang, R., Li, R., Xi, Y. (2023). Learning optimal multigrid smoothers via neural networks. SIAM Journal on Scientific Computing, 45(3) S199-S225 10.1137/21M1430030

Gokhale, T., Anirudh, R., Thiagarajan, J.J. and 3 more (Kailkhura, B.) (2023). Improving Diversity with Adversarially Learned Transformations for Domain Generalization. Proceedings - 2023 IEEE Winter Conference on Applications of Computer Vision, WACV 2023, 434–443 10.1109/WACV56688.2023.00051

Yang, J., Dzanic, T., Petersen, B. and 9 more (Mittal, K. Tomov, V. Camier, J.-S., Kolev, T. Anderson, R.) (2023). Reinforcement Learning for Adaptive Mesh Refinement. Proceedings of Machine Learning Research, 2065997–6014 -

He, X., Choi, Y., Fries, W.D. and 2 more (...) (2023). gLaSDI: Parametric physics-informed greedy latent space dynamics identification. Journal of Computational Physics, 489 10.1016/j.jcp.2023.112267

Gaffney, J.A., Humbird, K., Kruse, M. and 4 more (...) (2023). Iterative sampling of expensive simulations for faster deep surrogate training*. Contributions to Plasma Physics, 63(5–6) 10.1002/ctpp.202200190

Bhatia, H., Aydin, F., Carpenter, T.S. and 5 more (Bremer, P.-T.) (2023). The confluence of machine learning and multiscale simulations. Current Opinion in Structural Biology, 80 10.1016/j.sbi.2023.102569

Olivier, S., Pazner, W., Haut, T.S. and 1 more (...) (2023). A family of independent Variable Eddington Factor methods with efficient preconditioned iterative solvers. Journal of Computational Physics, 473 10.1016/j.jcp.2022.111747

Chen, L., Lin, P.-H., Vanderbruggen, T. and 3 more (Liao, C.) (2023). LM4HPC: Towards Effective Language Model Application in High-Performance Computing. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 1411418–33 10.1007/978-3-031-40744-4_2

Choi, H., Jeon, E.S., Shukla, A. and 1 more (...) (2023). Understanding the Role of Mixup in Knowledge Distillation: An Empirical Study. Proceedings - 2023 IEEE Winter Conference on Applications of Computer Vision, WACV 2023, 2318–2327 10.1109/WACV56688.2023.00235

Baker, K.L., Thomas, C.A., Landen, O.L. and 48 more (Milovich, J.L.) (2023). Reaching a burning plasma and ignition using smaller capsules/ Hohlraums, higher radiation temperatures, and thicker ablator/ice on the national ignition facility. Physics of Plasmas, 30(3) 10.1063/5.0131180

Reynolds, D.R., Gardner, D.J., Woodward, C.S. and 1 more (...) (2023). Arkode: A flexible ivp solver infrastructure for one-step methods. ACM Transactions on Mathematical Software, 49(2) 10.1145/3594632

Jeon, E.S., Choi, H., Shukla, A. and 1 more (...) (2023). Leveraging angular distributions for improved knowledge distillation. Neurocomputing, 518466–481 10.1016/j.neucom.2022.11.029

Mariscal, D.A., Djordjević, B.Z., Anirudh, R. and 35 more (Bremer, P.-T., Kailkhura, B., Thiagarajan, J., Van Essen, B) (2023). A flexible proton beam imaging energy spectrometer (PROBIES) for high repetition rate or single-shot high energy density (HED) experiments (invited). Review of Scientific Instruments, 94(2) 10.1063/5.0101845

Li, S., Lindstrom, P., Clyne, J. (2023). Lossy Scientific Data Compression With SPERR. Proceedings - 2023 IEEE International Parallel and Distributed Processing Symposium, IPDPS 2023, 1007–1017 10.1109/IPDPS54959.2023.00104

Baker, K.L., Maclaren, S., Jones, O. and 44 more (Gaffney, J.) (2023). Alpha heating of indirect-drive layered implosions on the National Ignition Facility. Physical Review E, 107(1) 10.1103/PhysRevE.107.015202

Cheung, S.W., Choi, Y., Copeland, D.M. and 1 more (...) (2023). Local Lagrangian reduced-order modeling for the Rayleigh-Taylor instability by solution manifold decomposition. Journal of Computational Physics, 472 10.1016/j.jcp.2022.111655

MacDonald, M.J., Di Stefano, C.A., Döppner, T. and 18 more (Gaffney, J.) (2023). The colliding planar shocks platform to study warm dense matter at the National Ignition Facility. Physics of Plasmas, 30(6) 10.1063/5.0146624

Brink, S., McKinsey, M., Boehme, D. and 9 more (Pearce, O.) (2023). Thicket: Seeing the Performance Experiment Forest for the Individual Run Trees. HPDC 2023 - Proceedings of the 32nd International Symposium on High-Performance Parallel and Distributed Computing, 281–293 10.1145/3588195.3592989

Jefferson, D.R., Barnes, P. (2023). Virtual Time III, Part 1: Unified Virtual Time Synchronization for Parallel Discrete Event Simulation. ACM Transactions on Modeling and Computer Simulation, 32(4) 10.1145/3505248

Kesavan, S.P., Bhatia, H., Bhatele, A. and 5 more (Brink, S, Gamblin, T., Pearce, O., Bremer, P.-T.) (2023). Scalable Comparative Visualization of Ensembles of Call Graphs. IEEE Transactions on Visualization and Computer Graphics, 29(3) 1691–1704 10.1109/TVCG.2021.3129414

Aravena, I., Molzahn, D.K., Zhang, S. and 12 more (Petra, C.G.) (2023). Recent Developments in Security-Constrained AC Optimal Power Flow: Overview of Challenge 1 in the ARPA-E Grid Optimization Competition. Operations Research, 71(6) 1997–2014 10.1287/opre.2022.0315

Pazner, W., Kolev, T., Dohrmann, C.R. (2023). Low-order preconditioning for the high-order finite element De Rham complex. SIAM Journal on Scientific Computing, 45(2) A675-A702 10.1137/22M1486534

Camier, J.-S., Dobrev, V., Knupp, P. and 4 more (Kolev, T., Mittal, K., Tomov, V.) (2023). Accelerating high-order mesh optimization using finite element partial assembly on GPUs. Journal of Computational Physics, 474 10.1016/j.jcp.2022.111808

Ding, X., Chen, L., Emani, M. and 6 more (Liao, C.) (2023). HPC-GPT: Integrating Large Language Model for High-Performance Computing. ACM International Conference Proceeding Series, 951–960 10.1145/3624062.3624172

Christopherson, A.R., Hurricane, O.A., Weber, C. and 8 more (Milovich, J.L.) (2023). Alpha-heating analysis of burning plasma and ignition experiments on the National Ignition Facility. Physics of Plasmas, 30(6) 10.1063/5.0140888

Choi, J., Bang, K., Jang, S. and 10 more (Buttler, D.) (2023). Deep learning of electrochemical CO2 conversion literature reveals research trends and directions. Journal of Materials Chemistry A, 11(33) 17628–17643 10.1039/d3ta02780e

Leventhal, S., Gyulassy, A., Heimann, M. and 1 more (...) (2023). Exploring Classification of Topological Priors with Machine Learning for Feature Extraction. IEEE Transactions on Visualization and Computer Graphics, 1–12 10.1109/TVCG.2023.3248632

Mai, T., Cheung, S.W., Park, J.S.R. (2023). Constraint energy minimizing generalized multiscale finite element method for multi-continuum Richards equations. Journal of Computational Physics, 477 10.1016/j.jcp.2023.111915

Sharma, A., Uehara, G., Narayanaswamy, V. and 2 more (...) (2023). Signal Analysis-Synthesis Using the Quantum Fourier Transform. ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing – Proceedings, 10.1109/ICASSP49357.2023.10096524

Santhosh, A., Kang, S., Keilbart, N. and 4 more (...) (2023). Influence of near-surface oxide layers on TiFe hydrogenation: mechanistic insights and implications for hydrogen storage applications. Journal of Materials Chemistry A, 11(35) 18776–18789 10.1039/d3ta02205f

Tsiokanos, I., Tompazi, S., Georgakoudis, G. and 2 more (...) (2023). ARETE: Accurate Error Assessment via Machine Learning-Guided Dynamic-Timing Analysis. IEEE Transactions on Computers, 72(4) 1026–1040 10.1109/TC.2022.3191966

Nora, R.C., Birge, N., Casey, D. and 24 more (Gaffney, J.) (2023). Correlations between asymmetric compression, burn amplification, and hot-spot velocities in inertial confinement fusion implosions. Physics of Plasmas, 30(9) 10.1063/5.0153421

Liegeois, K., Perego, M., Hartland, T. (2023). PyAlbany: A Python interface to the C++ multiphysics solver Albany. Journal of Computational and Applied Mathematics, 425 10.1016/j.cam.2022.115037

Tommasini, R., Casey, D.T., Clark, D. and 20 more (Milovich, J.) (2023). Increased compression in HDC-based ablator implosions using modified drive profile. Physical Review Research, 5(4) 10.1103/PhysRevResearch.5.L042034

Olson, M.L., Liu, S., Anirudh, R. and 3 more (Thiagarajan, J.J., Bremer, P.-T.) (2023). Cross-GAN Auditing: Unsupervised Identification of Attribute Level Similarities and Differences Between Pretrained Generative Models. Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2023-7981-7990 10.1109/CVPR52729.2023.00771

Regev, S., Chiang, N.-Y., Darve, E. and 4 more (Petra, C.G.) (2023). HyKKT: a hybrid direct-iterative method for solving KKT linear systems. Optimization Methods and Software, 38(2) 332–355 10.1080/10556788.2022.2124990

Kalchev, D.Z., Vassilevski, P.S., Villa, U. (2023). Parallel element-based algebraic multigrid for H(curl) and H(div) problems using the ParElag library. SIAM Journal on Scientific Computing, 45(3) S371-S400 10.1137/21M1433253

Chapman, J., Kweon, K.E., Zhu, Y. and 10 more (Keilbart, N.) (2023). Hydrogen in disordered titania: connecting local chemistry, structure, and stoichiometry through accelerated exploration. Journal of Materials Chemistry A, 11(16) 8670–8683 10.1039/d2ta07075h

Djordjević, B.Z., Kim, J., Wilks, S.C. and 15 more (Bremer, P.-T., Anirudh, R., Thiagarajan, J.J.) (2023). Transfer learning and multi-fidelity modeling of laser-driven particle acceleration. Physics of Plasmas, 30(4) 10.1063/5.0139285

Sio, H., Moody, J.D., Pollock, B.B. and 63 more (Masters, N.) (2023). Performance scaling with an applied magnetic field in indirect-drive inertial confinement fusion implosions. Physics of Plasmas, 30(7) 10.1063/5.0150441

Guzik, S.M., Christopher, J., Walters, S. and 3 more (Falgout, R.D.) (2023). On the use of a multigrid-reduction-in-time algorithm for multiscale convergence of turbulence simulations. Computers and Fluids, 261 10.1016/j.compfluid.2023.105910

Liu, J., Anirudh, R., Thiagarajan, J.J. and 4 more (Kim, H.) (2023). DOLCE: A Model-Based Probabilistic Diffusion Framework for Limited-Angle CT Reconstruction. Proceedings of the IEEE International Conference on Computer Vision, 10464–10474 10.1109/ICCV51070.2023.00963

Kelly, J.F., Reddy, S. , Giraldo, F.X. and 4 more (...) (2023). A physics-based open atmosphere boundary condition for height-coordinate atmospheric models. Journal of Computational Physics, 482 10.1016/j.jcp.2023.112044

Lloyd, C.J., Mittal, K., Dutta, S. and 4 more (...) (2023). Multi-fidelity modelling of shark skin denticle flows: insights into drag generation mechanisms. Royal Society Open Science, 10(2) 10.1098/rsos.220684

Tekriwal, M., Appel, A.W., Kellison, A.E. and 2 more (...) (2023). Verified Correctness, Accuracy, and Convergence of a Stationary Iterative Linear Solver: Jacobi Method. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 14101206–221 10.1007/978-3-031-42753-4_14

Steil, T., Reza, T. and 2 more (Pearce, R., Priest, M.) (2023). Embracing Irregular Parallelism in HPC with YGM. Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis, SC 2023, 10.1145/3581784.3607103

Brim, M.J., Moody, A.T., Lim, S.-H. and 5 more (Mohror, K.M.) (2023). UnifyFS: A User-level Shared File System for Unified Access to Distributed Local Storage. Proceedings - 2023 IEEE International Parallel and Distributed Processing Symposium, IPDPS 2023, 290–300 10.1109/IPDPS54959.2023.00037

Kim, Y., Ghosh, D., Constantinescu, E.M. and 1 more (...) (2023). GPU-accelerated DNS of compressible turbulent flows. Computers and Fluids, 251 10.1016/j.compfluid.2022.105744

Menon, H., Diffenderfer, J., Georgakoudis, G. and 6 more (Laguna, I., Osei-Kuffuor, D., Parasyris, K.) (2023). Approximate High-Performance Computing: A Fast and Energy-Efficient Computing Paradigm in the Post-Moore Era. IT Professional, 25(2) 7–15 10.1109/MITP.2023.3254642

Thopalli, K., Anirudh, R., Turaga, P., Thiagarajan, J.J. (2023). The Surprising Effectiveness of Deep Orthogonal Procrustes Alignment in Unsupervised Domain Adaptation. IEEE Access, 1112858–12869 10.1109/ACCESS.2023.3239673

Laguna, I., Tran, A., Gopalakrishnan, G. (2023). Finding inputs that trigger floating-point exceptions in heterogeneous computing via Bayesian optimization. Parallel Computing, 117 10.1016/j.parco.2023.103042

Raviv, U., Asor, R., Shemesh, A. and 5 more (Ben-Nun, T.) (2023). Insight into structural biophysics from solution X-ray scattering. Journal of Structural Biology, 215(4) 10.1016/j.jsb.2023.108029

Swartz, K.E., Mittal, K., Schmidt, M. and 3 more (...) (2023). Yet another parameter-free shape optimization method. Structural and Multidisciplinary Optimization, 66(12) 10.1007/s00158-023-03684-9

Schoelmerich, M.O., Döppner, T., Allen, C.H. and 21 more (Masters, N.) (2023). Developing a platform for Fresnel diffractive radiography with 1 μ m spatial resolution at the National Ignition Facility. Review of Scientific Instruments, 94(1) 10.1063/5.0101890

Barrera, J.-L., Kolev, T., Mittal, K., Tomov, V. (2023). High-Order Mesh Morphing for Boundary and Interface Fitting to Implicit Geometries. CAD Computer Aided Design, 158 10.1016/j.cad.2023.103499

Knueven, B., Mildebrath, D., Muir, C. and 3 more (Watson, J.-P.) (2023). A parallel hub-and-spoke system for large-scale scenario-based optimization under uncertainty. Mathematical Programming Computation, 15(4) 591–619 10.1007/s12532-023-00247-3

Ladd, W., Jensen, C., Vardhan, M. and 4 more (Draeger, E.W.) (2023). Optimizing Cloud Computing Resource Usage for Hemodynamic Simulation. Proceedings - 2023 IEEE International Parallel and Distributed Processing Symposium, IPDPS 2023, 568–578 10.1109/IPDPS54959.2023.00063

Li, X., Laguna, I., Fang, B. and 3 more (Gopalakrishnan, G.) (2023). Design and Evaluation of GPU-FPX: A Low-Overhead tool for Floating-Point Exception Detection in NVIDIA GPUs. HPDC 2023 - Proceedings of the 32nd International Symposium on High-Performance Parallel and Distributed Computing, 59–71 10.1145/3588195.3592991

Hategan-Marandiuc, M., Merzky, A., Collier, N. and 10 more (Laney, D.) (2023). PSI/J: A Portable Interface for Submitting, Monitoring, and Managing Jobs. Proceedings 2023 IEEE 19th International Conference on e-Science, e-Science 2023, 10.1109/e-Science58273.2023.10254912

Petra, C.G., Aravena, I. (2023). A Surrogate-Based Asynchronous Decomposition Technique for Realistic Security-Constrained Optimal Power Flow Problems. Operations Research, 71(6) 2015–2030 10.1287/opre.2022.0229

Dzanic, T., Witherden, F.D., Martinelli, L. (2023). A positivity-preserving and conservative high-order flux reconstruction method for the polyatomic Boltzmann–BGK equation. Journal of Computational Physics, 486 10.1016/j.jcp.2023.112146

Jeon, E.S., Lohit, S., Anirudh, R. and 1 more (...) (2023). Robust Time Series Recovery and Classification Using Test-Time Noise Simulator Networks. ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing – Proceedings, 10.1109/ICASSP49357.2023.10096888

Pun, S.-M., Cheung, S.W. (2023). Online Adaptive Algorithm for Constraint Energy Minimizing Generalized Multiscale Discontinuous Galerkin Method. Multiscale Modeling and Simulation, 21(1) 168–193 10.1137/21M1402625

De Sterck, H., Falgout, R.D., Krzysik, O.A. and 1 more (...) (2023). Efficient Multigrid Reduction-in-Time for Method-of-Lines Discretizations of Linear Advection. Journal of Scientific Computing, 96(1) 10.1007/s10915-023-02223-4

Angus, J.R., Farmer, W., Friedman, A. and 4 more (Ghosh, D.) (2023). An implicit particle code with exact energy and charge conservation for electromagnetic studies of dense plasmas. Journal of Computational Physics, 491 10.1016/j.jcp.2023.112383

Miao, D., Laguna, I., Rubio-González, C. (2023). Expression Isolation of Compiler-Induced Numerical Inconsistencies in Heterogeneous Code. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 13948381–401 10.1007/978-3-031-32041-5_20

Petra, C.G., Salazar De Troya, M., Petra, N. and 3 more (Choi, Y.) (2023). On the implementation of a quasi-Newton interior-point method for PDE-constrained optimization using finite element discretizations. Optimization Methods and Software, 38(1) 59–90 10.1080/10556788.2022.2117354

Ben-Nun, T., Ates, B., Calotoiu, A. and 1 more (...) (2023). Bridging Control-Centric and Data-Centric Optimization. CGO 2023 - Proceedings of the 21st ACM/IEEE International Symposium on Code Generation and Optimization, 173–185 10.1145/3579990.3580018

Baker, K.L., Amendt, P.A., Ross, J.S. and 25 more (Milovich, J.) (2023). First large capsule implosions in a frustum-shaped hohlraum. Physics of Plasmas, 30(9) 10.1063/5.0163396

Yang, J., Mittal, K., Dzanic, T. and 5 more (Petrides, S., Anderson, R.) (2023). Multi-Agent Reinforcement Learning for Adaptive Mesh Refinement. Proceedings of the International Joint Conference on Autonomous Agents and Multiagent Systems, AAMAS, 2023-14-22 -

Chen, Z., Kailkhura, B., Zhou, Y. (2023). An accelerated proximal algorithm for regularized nonconvex and nonsmooth bi-level optimization. Machine Learning, 112(5) 1433–1463 10.1007/s10994-023-06329-6

Leventhal, S., Gyulassy, A., Pascucci, V., Heimann, M. (2023). Modeling Hierarchical Topological Structure in Scientific Images with Graph Neural Networks. Proceedings - International Conference on Image Processing, ICIP, 2995–2999 10.1109/ICIP49359.2023.10222089

Devarajan, H., Mohror, K. (2023). Mimir: Extending I/O Interfaces to Express User Intent for Complex Workloads in HPC. Proceedings - 2023 IEEE International Parallel and Distributed Processing Symposium, IPDPS 2023, 178–188 10.1109/IPDPS54959.2023.00027

Georgouli, K., Yeom, J.-S., Blake, R.C. and 1 more (...) (2023). Multi-scale models of whole cells: progress and challenges. Frontiers in Cell and Developmental Biology, 11 10.3389/fcell.2023.1260507

Jeong, S., Li, M., Berger, M., Liu, S. (2023). Concept Lens: Visually Analyzing the Consistency of Semantic Manipulation in GANs. Proceedings - 2023 IEEE Visualization Conference - Short Papers, VIS 2023, 221–225 10.1109/VIS54172.2023.00053

Stevenson, G.A., Kirshner, D., Bennion, B.J. and 11 more (Kim, H.) (2023). Clustering Protein Binding Pockets and Identifying Potential Drug Interactions: A Novel Ligand-Based Featurization Method. Journal of Chemical Information and Modeling, 63(21) 6655–6666 10.1021/acs.jcim.3c00722

Do, A., Casey, D.T., Clark, D.S. and 47 more (Milovich, J., Kim, Y) (2023). Measurements of improved stability to achieve higher fuel compression in ICF. Physics of Plasmas, 30(11) 10.1063/5.0167424

Ltaief, H., Yang, U.M. (2023). Welcome Message from the IEEE Cluster 2023 Workshops Chairs. Proceedings - IEEE International Conference on Cluster Computing, ICCC, 10.1109/CLUSTERWorkshops61457.2023.00006

Ben-Nun, T., Gianinazzi, L., Hoefler, T. and 1 more (...) (2023). Maximum Flows in Parametric Graph Templates. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 1389897–111 10.1007/978-3-031-30448-4_8

Jefferson, D.R., Barnes, P.D. (2023). Virtual Time III, Part 2: Combining Conservative and Optimistic Synchronization. ACM Transactions on Modeling and Computer Simulation, 32(4) 10.1145/3505249

Magri, V.A.P., Falgout, R.D.,Yang, U.M. (2023). A new semistructured algebraic multigrid method. SIAM Journal on Scientific Computing, 45(3) S439-S460 10.1137/21M1434118

Narayanaswamy, V., Mubarka, Y.,Anirudh, R. and 2 more (Thiagarajan, J.J., Anirudh, R.) (2023). Exploring Inlier and Outlier Specification for Improved Medical OOD Detection. Proceedings - 2023 IEEE/CVF International Conference on Computer Vision Workshops, ICCVW 2023, 4591–4600 10.1109/ICCVW60793.2023.00493

Elis, B., Pearce, O., Boehme, D. and 2 more (...) (2023). Non-Blocking GPU-CPU Notifications to Enable More GPU-CPU Parallelism. ACM International Conference Proceeding Series, 1–11 10.1145/3635035.3635036

Parasyris, K.,Georgakoudis, G., Rangel, E. and 2 more (Laguna, I., Doerfert, J.) (2023). Scalable Tuning of (OpenMP) GPU Applications via Kernel Record and Replay. Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis, SC 2023, 10.1145/3581784.3607098

Roychowdhury, S., Mahmud, S.T., Martin, A. and 5 more (Draeger, E.W.) (2023). Enhancing Adaptive Physics Refinement Simulations Through the Addition of Realistic Red Blood Cell Counts. Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis, SC 2023, 10.1145/3581784.3607105

Matys, M., Klimo, O., Jirka, M. and 7 more (Nikl, J.) (2023). PLASMA SHUTTER FOR LASER-DRIVEN ION ACCELERATION. 21st Conference of Czech and Slovak Physicists, Proceedings, 85–86 -

Zhang, S., Vogl, C.J., Larson, V.E. and 4 more (Woodward, C.S.) (2023). Removing Numerical Pathologies in a Turbulence Parameterization Through Convergence Testing. Journal of Advances in Modeling Earth Systems, 15(5) 10.1029/2023MS003633

Wang, J., Petra, C.G. (2023). A sequential quadratic programming algorithm for nonsmooth problems with upper-c2 objective. SIAM Journal on Optimization, 33(3) 2379–2405 10.1137/22M1490995

Iwabuchi, K., Steil, T., Priest, M. and 2 more (Pearce, R.) (2023). Towards A Massive-scale Distributed Neighborhood Graph Construction. ACM International Conference Proceeding Series, 730–738 10.1145/3624062.3625132

Kadeethum, T., Jakeman, J.D., Choi, Y. and 2 more (...) (2023). Epistemic Uncertainty-Aware Barlow Twins Reduced Order Modeling for Nonlinear Contact Problems. IEEE Access, 1162970–62985 10.1109/ACCESS.2023.3284837

Piercey, P., Pearce, R., Veldt, N. (2023). Coordinated Botnet Detection in Social Networks via Clustering Analysis. ACM International Conference Proceeding Series, 192–196 10.1145/3605731.3608959

Dahm, J., Davis, E., Deconinck, F. and 10 more (Ben-Nun, T.) (2023). Pace v0.2: a Python-based performance-portable atmospheric model. Geoscientific Model Development, 16(9) 2719–2736 10.5194/gmd-16-2719-2023

Billingsley, G., Dietlmeier, J., Narayanaswamy, V. and 2 more (...) (2023). AN L2-Normalized Spatial Attention Network for Accurate and Fast Classification of Brain Tumors in 2D T1-Weighted CE-MRI Images. Proceedings - International Conference on Image Processing, ICIP, 1895–1899 10.1109/ICIP49359.2023.10222887

Callow, T.J., Nikl, J., Kraisler, E. and 1 more (...) (2023). Physics-enhanced neural networks for equation-of-state calculations. Machine Learning: Science and Technology, 4(4) 10.1088/2632-2153/ad13b9

Pearce, O., Brink, S. (2023). Finding the forest in the trees: Enabling performance optimization on heterogeneous architectures through data science analysis of ensemble performance data. International Journal of High Performance Computing Applications, 37(3–4) 434–441 10.1177/10943420231175687

Migliore, C.,Stowell, M., Wright, J. and 1 more (...) (2023). Development of impedance sheath boundary condition in Stix finite element RF code. AIP Conference Proceedings, 2984(1) 10.1063/5.0162402

Ponce, C., Li, R., Mao, C. and 1 more (...) (2023). Multilevel-in-width training for deep neural network regression. Numerical Linear Algebra with Applications, 30(5) 10.1002/nla.2501

Laguna, I., Georgakoudis, G., Parasyris, K. (2023). AI4DEV 2023: First Workshop on AI Assisted Software Development for HPC. ACM International Conference Proceeding Series

Jeon, E.S., Choi, H., Shukla, A. and 3 more (...) (2023). Constrained Adaptive Distillation Based on Topological Persistence for Wearable Sensor Data. IEEE Transactions on Instrumentation and Measurement, 721–14 10.1109/TIM.2023.3329818

Izumi, N., Döppner, T., Milovich, J. and 19 more (...) (2023). Control of low-mode drive asymmetry in an efficient long-pulse low gas-fill density Hohlraum. Physics of Plasmas, 30(3) 10.1063/5.0136145

Trivedi, P., Koutra, D., Thiagarajan, J.J. (2023). A Closer Look At Scoring Functions And Generalization Prediction. ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings, 2023- 10.1109/ICASSP49357.2023.10095957

D'Ambra, P., Vassilevski, P.S., Cutillo, L. (2023). Extending bootstrap AMG for clustering of attributed graphs. Applied Mathematics and Computation, 447 10.1016/j.amc.2023.127904

Boehme, D., Danalis, A., Weidendorfer, J. (2023). Workshop on Programming and Performance Visualization Tools (ProTools). ACM International Conference Proceeding Series, 1343–1344 -

Hsiao, S.S., Salari, K., Balachandar, S. (2023). Compressible pairwise interaction extended point-particle model for force prediction of shock-particle bed interaction. Physical Review Fluids, 8(5) 10.1103/PhysRevFluids.8.054301

Guo, L., Lofstead, J., Ren, J. and 5 more (Laguna, I.) (2023). Understanding System Resilience for Converged Computing of Cloud, Edge, and HPC. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 13999221–233 10.1007/978-3-031-40843-4_17

Rountree, B., Condee, W. (2023). Nonsense code: A nonmaterial performance. Digital Humanities Quarterly, 17(2) -

Badger, J., Henneking, S., Petrides, S. and 1 more (...) (2023). Scalable DPG multigrid solver for Helmholtz problems: A study on convergence. Computers and Mathematics with Applications, 14881–92 10.1016/j.camwa.2023.07.006

Fan, K., Rountree, B., Patki, T. and 5 more (...) (2023). msr-genie: Navigating Model Specific Registers Across Processor Generations. ACM International Conference Proceeding Series, 696–703 10.1145/3624062.3624146

Patki, T., Ahn, D., Milroy, D. and 5 more (Yeom, J.-S., Scogland, T.) (2023). Fluxion: A Scalable Graph-Based Resource Model for HPC Scheduling Challenges. ACM International Conference Proceeding Series, 2077–2088 10.1145/3624062.3624286

Kshetri, N., Schordan, M. (2023). Can China Catch Up to the United States in Generative Artificial Intelligence?. IT Professional, 25(4) 94–97 10.1109/MITP.2023.3297384

Li, Y., Zhao, P., Lin, X. and 2 more (Kailkhura, B.) (2023). Less is More: Data Pruning for Faster Adversarial Training. CEUR Workshop Proceedings, 3381 -

Bollapragada, R., Karamanli, C., Keith, B. and 3 more (Petrides, S., Wang, J.) (2023). An adaptive sampling augmented Lagrangian method for stochastic optimization with deterministic constraints. Computers and Mathematics with Applications, 149239–258 10.1016/j.camwa.2023.09.014

Hartland, T., Stadler, G., Perego, M. and 2 more (...) (2023). Hierarchical off-diagonal low-rank approximation of Hessians in inverse problems, with application to ice sheet model initialization. Inverse Problems, 39(8) 10.1088/1361-6420/acd719

De Sterck, H., Falgout, R.D., Krzysik, O.A. (2023). Fast multigrid reduction-in-time for advection via modified semi-Lagrangian coarse-grid operators*. SIAM Journal on Scientific Computing, 45(4) A1890-A1916 10.1137/22M1486522

Migliore, C., Wright, J.C., Stowell, M. and 1 more (...) (2023). Using the Stix finite element RF code to investigate operation optimization of the ICRF antenna on Alcator C-Mod. Nuclear Fusion, 63(10) 10.1088/1741-4326/acee11

Draeger, E.W., Siegel, A., Mohror, K. and 1 more (...) (2023). Exascale Was Not Inevitable; Neither Is What Comes Next. Computing in Science and Engineering, 25(3) 79–83 10.1109/MCSE.2023.3311375

Olivier, S., Haut, T.S. (2023). High-Order Mixed Finite Element Variable Eddington Factor Methods. Journal of Computational and Theoretical Transport, 52(2) 79–142 10.1080/23324309.2023.2200308

Pazner, W., Kolev, T., Camier, J.-S. (2023). End-to-end GPU acceleration of low-order-refined preconditioning for high-order finite element discretizations. International Journal of High Performance Computing Applications, 37(5) 578–599 10.1177/10943420231175462

Vogl, C.J., Joseph, I., Holec, M. (2023). Mesh refinement for anisotropic diffusion in magnetized plasmas. Computers and Mathematics with Applications, 145159–174 10.1016/j.camwa.2023.06.019

Lei, B., Ding, C., Chen, L. and 2 more (Liao, C.) (2023). Creating a Dataset for High-Performance Computing Code Translation using LLMs: A Bridge Between OpenMP Fortran and C++. 2023 IEEE High Performance Extreme Computing Conference, HPEC 2023, 10.1109/HPEC58863.2023.10363534

Hoang, D., Bhatia, H., Lindstrom, P. and 1 more (...) (2023). Progressive Tree-Based Compression of Large-Scale Particle Data. IEEE Transactions on Visualization and Computer Graphics, 1–18 10.1109/TVCG.2023.3260628

Kogiou, O., Devarajan, H., Wang, C. and 2 more (Mohror, K.M.) (2023). I/O characterization and performance evaluation of large-scale storage architectures for heterogeneous workloads. Proceedings - IEEE International Conference on Cluster Computing, ICCC, 44–45 10.1109/CLUSTERWorkshops61457.2023.00017

Pérez-Callejo, G., Bouffetier, V., Ceurvorst, L. and 10 more (Holec, M.) (2023). Phase imaging of irradiated foils at the OMEGA EP facility using phase-stepping X-ray Talbot-Lau deflectometry. High Power Laser Science and Engineering, 11 10.1017/hpl.2023.44

Bremer, P.-T., Potter, K., Frey, S. and 5 more (...) (2023). Preface IEEE LDAV 2023. Proceedings - 2023 IEEE 13th Symposium on Large Data Analysis and Visualization, LDAV 2023, 10.1109/LDAV60332.2023.00005

Devi, S., Thopalli, K., Dayana, R. and 2 more (Thiagarajan, J.J.) (2023). Improving Object Detectors by Exploiting Bounding Boxes for Augmentation Design. IEEE Access, 11108356–108364 10.1109/ACCESS.2023.3320638

Collom, G., Li, R.P., Bienz, A. (2023). Optimizing Irregular Communication with Neighborhood Collectives and Locality-Aware Parallelism. ACM International Conference Proceeding Series, 427–437 10.1145/3624062.3624111

Goujard, G., Watson, J.-P., Woodruff, D.L. (2023). Mape_Maker: A Scenario Creator. Energy Systems, 14(3) 731–757 10.1007/s12667-020-00408-6

Vargas, D.A., Falgout, R.D., Gunther, S. and 1 more (...) (2023). MULTIGRID REDUCTION in TIME for CHAOTIC DYNAMICAL SYSTEMS. SIAM Journal on Scientific Computing, 45(4) A2019-A2042 10.1137/22M1518335

Roy, T., Andrej, J., Beck, V.A. (2023). A scalable DG solver for the electroneutral Nernst-Planck equations. Journal of Computational Physics, 475 10.1016/j.jcp.2022.111859

Castro, R.L., Ivanov, A., Andrade, D. and 3 more (Ben-Nun, T.) (2023). VENOM: A Vectorized N:M Format for Unleashing the Power of Sparse Tensor Cores. Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis, SC 2023, 10.1145/3581784.3607087

Tian, S., Scogland, T., Chapman, B., Doerfert, J. (2023). OpenMP Kernel Language Extensions for Performance Portable GPU Codes. ACM International Conference Proceeding Series, 876–883 10.1145/3624062.3624164

Casey, D., Macgowan, B., Hurricane, O. and 19 more (Milovich, J.) (2023). Diagnosing the origin and impact of low-mode asymmetries in ignition experiments at the National Ignition Facility. Physical Review E, 108(5) 10.1103/PhysRevE.108.L053203

Chen, L., Ding, X., Emani, M. and 3 more (Liao, C.) (2023). Data Race Detection Using Large Language Models. ACM International Conference Proceeding Series, 215–223 10.1145/3624062.3624088

Rodrigues, F., Giovannelli, A., Pavanatto, L. and 3 more (Miao, H.) (2023). AMP-IT and WISDOM: Improving 3D Manipulation for High-Precision Tasks in Virtual Reality. Proceedings - 2023 IEEE International Symposium on Mixed and Augmented Reality, ISMAR 2023, 303–311 10.1109/ISMAR59233.2023.00045

Ricketson, L.F., Chen, G. (2023). A pseudospectral implicit particle-in-cell method with exact energy and charge conservation. Computer Physics Communications, 291 10.1016/j.cpc.2023.108811

Wingate, B.A., Rosemeier, J.,Haut, T. (2023). Mean Flow from Phase Averages in the 2D Boussinesq Equations. Atmosphere, 14(10) 10.3390/atmos14101523

Holmen, J.K., Vergara Larrea, V.G., Draeger, E.W. and 6 more (...) (2023). Strengthening the US Department of Energy's Recruitment Pipeline: The DOE/NNSA Predictive Science Academic Alliance Program (PSAAP) Experience. PEARC 2023 - Computing for the common good: Practice and Experience in Advanced Research Computing, 137–144 10.1145/3569951.3593606

Subramanyam, R., Heimann, M., Jayram, T.S. and 2 more (Thiagarajan, J.J., Anirudh, R.) (2023). Contrastive Knowledge-Augmented Meta-Learning for Few-Shot Classification. Proceedings - 2023 IEEE Winter Conference on Applications of Computer Vision, WACV 2023, 2478–2486 10.1109/WACV56688.2023.00251

Laguna, I., Rubio-González, C. (2023). Seventh International Workshop on Software Correctness for HPC Applications (Correctness 2023). ACM International Conference Proceeding Series, 177–178 -

Reza, T.,Steil, T., Sanders, G. and 1 more (...) (2023). Distributed approximate minimal Steiner trees with millions of seed vertices on billion-edge graphs. Journal of Parallel and Distributed Computing, 181 10.1016/j.jpdc.2023.104717

Balos, C.J., Roberts, S., Gardner, D.J. (2023). Leveraging Mixed Precision in Exponential Time Integration Methods. 2023 IEEE High Performance Extreme Computing Conference, HPEC 2023, 10.1109/HPEC58863.2023.10363489

Kucharik, M., Nikl, J., Limpouch, J. (2023). Second-Order Magnetic Field Generation Model for Lagrangian and ALE Plasma Simulations. AIP Conference Proceedings, 2849(1) 10.1063/5.0162163

Jaskie, K., Vaughn, N., Narayanaswamy, V. and 3 more (...) (2023). An Adaptive Asymmetric Loss Function for Positive Unlabeled Learning. Proceedings of SPIE - The International Society for Optical Engineering, 12521 10.1117/12.2675650

Boito, F., Brandt, J., Cardellini, V. and 24 more (Patki, T.) (2023). Autonomy Loops for Monitoring, Operational Data Analytics, Feedback, and Response in HPC Operations. Proceedings - IEEE International Conference on Cluster Computing, ICCC, 37–43 10.1109/CLUSTERWorkshops61457.2023.00016

Olivier, S., Haut, T.S. (2023). High-Order Finite Element Second Moment Methods for Linear Transport. Nuclear Science and Engineering, 10.1080/00295639.2023.2238171

Tanade, C., Rakestraw, E., Ladd, W. and 2 more (Draeger, E.W.) (2023). Cloud Computing to Enable Wearable-Driven Longitudinal Hemodynamic Maps. Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis, SC 2023, 10.1145/3581784.3607101

Doerfert, J., Georgakoudis, G., Parasyris, K. (2023). The Third Workshop on LLVM in Parallel Processing (LLPP 2023). ACM International Conference Proceeding Series, 10.1145/3605731.3605731

Dzanic, T., Trojak, W., Witherden, F.D. (2023). Bounds preserving temporal integration methods for hyperbolic conservation laws. Computers and Mathematics with Applications, 1356–18 10.1016/j.camwa.2023.01.023

Arnold, D.C., Badia, R.M., Mohror, K. (2023). Preface. ACM International Conference Proceeding Series,xxvi-xxvii

Subramanyam, R., Thopalli, K., Berman, S. and 2 more (Thiagarajan, J.J.) (2023). Single-Shot Domain Adaptation via Target-Aware Generative Augmentations. ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings, 10.1109/ICASSP49357.2023.10096784

Hall, J., Lathi, A., Lowenthal, D.K., Patki, T. (2023). Evaluating the Potential of Coscheduling on High-Performance Computing Systems. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 14283155–172 10.1007/978-3-031-43943-8_8

Trümper, L., Ben-Nun, T., Schaad, P. and 2 more (...) (2023). Performance Embeddings: A Similarity-Based Transfer Tuning Approach to Performance Optimization. Proceedings of the International Conference on Supercomputing, 50–62 10.1145/3577193.3593714

Yousef, A.Z., Draeger, E.W., Randles, A. (2023). Low-Cost Post Hoc Reconstruction of HPC Simulations at Full Resolution. Proceedings - 2023 IEEE 13th Symposium on Large Data Analysis and Visualization, LDAV 2023, 17–21 10.1109/LDAV60332.2023.00009

Thopalli, K., Devi, S., Thiagarajan, J.J. (2023). InterAug: A Tuning-Free Augmentation Policy for Data-Efficient and Robust Object Detection. Proceedings - 2023 IEEE/CVF International Conference on Computer Vision Workshops, ICCVW 2023, 253–261 10.1109/ICCVW60793.2023.00033

Pearce, O., Scott, A., Becker, G. and 7 more (Brink, S., Gamblin, T.) (2023). Towards Collaborative Continuous Benchmarking for HPC. ACM International Conference Proceeding Series, 627–635 10.1145/3624062.3624135

Reimer, R.J., Goncalves, A., Soper, B. and 7 more (...) (2023). An electronic health record cohort of Veterans with amyotrophic lateral sclerosis. Amyotrophic Lateral Sclerosis and Frontotemporal Degeneration, 24(7–8) 695–701 10.1080/21678421.2023.2239300

Roychowdhury, S., Draeger, E.W., Randles, A. (2023). Establishing metrics to quantify spatial similarity in spherical and red blood cell distributions. Journal of Computational Science, 71 10.1016/j.jocs.2023.102060

Fletcher, L., Steil, T., Pearce, R. (2023). Optimizing a Distributed Graph Data Structure for K - Path Centrality Estimation on HPC. 2023 IEEE High Performance Extreme Computing Conference, HPEC 2023, 10.1109/HPEC58863.2023.10363577

Thopalli, K., Subramanyam, R., Turaga, P., Thiagarajan, J.J. (2023). Target-Aware Generative Augmentations for Single-Shot Adaptation. Proceedings of Machine Learning Research, 20234105–34119 -

Erlandson, L., Atkins, Z., Fox, A. and 3 more (Patki, T., Vogl, C.J.) (2023). Resilient s-ACD for Asynchronous Collaborative Solutions of Systems of Linear Equations. Proceedings of the 18th Conference on Computer Science and Intelligence Systems, FedCSIS 2023, 441–450 10.15439/2023F8932

Fink, Z., Parasyris, K., Georgakoudis, G. and 1 more (...) (2023). HPAC-Offload: Accelerating HPC Applications with Portable Approximate Computing on the GPU. Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis, SC 2023, 10.1145/3581784.3607095

Schaad, P., Schneider, T., Ben-Nun, T. and 3 more (...) (2023). FuzzyFlow: Leveraging Dataflow to Find and Squash Program Optimization Bugs. Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis, SC 2023, 10.1145/3581784.3613214

Yildirim, I., Devarajan, H., Kougkas, A. and 2 more (Mohror, K.M.) (2023). IOMax: Maximizing Out-of-Core I/O Analysis Performance on HPC Systems. ACM International Conference Proceeding Series, 1209–1215 10.1145/3624062.3624191

Dzanic, T., Witherden, F.D. (2023). Positivity-preserving entropy filtering for the ideal magnetohydrodynamics equations. Computers and Fluids, 266 10.1016/j.compfluid.2023.106056

Reddy, S., Waruszewski, M., de Braganca Alves, F.A.V. and 1 more (...) (2023). Schur complement IMplicit-EXplicit formulations for discontinuous Galerkin non-hydrostatic atmospheric models. Journal of Computational Physics, 491 10.1016/j.jcp.2023.112361

Bader, J., Belak, J., Bement, M. and 31 more (Laney, D, Sul, S.-J.) (2023). Novel Approaches Toward Scalable Composable Workflows in Hyper-Heterogeneous Computing Environments. ACM International Conference Proceeding Series, 2097–2108 10.1145/3624062.3626283

Kim, Y., Choi, Y., Widemann, D., Zohdi, T. (2022). A fast and accurate physics-informed neural network reduced order model with shallow masked autoencoder. Journal of Computational Physics, 451. 10.1016/j.jcp.2021.110841

Kadeethum, T., Ballarin, F., Choi, Y. and 3 more (2022). Non-intrusive reduced order modeling of natural convection in porous media using convolutional autoencoders: Comparison with linear subspace techniques. Advances in Water Resources, 160. 10.1016/j.advwatres.2021.104098.

Fries, W.D., He, X., Choi, Y. (2022). LaSDI: Parametric Latent Space Dynamics Identification. Computer Methods in Applied Mechanics and Engineering, 399. 10.1016/j.cma.2022.115436

Copeland, D.M., Cheung, S.W., Huynh, K., Choi, Y. (2022). Reduced order models for Lagrangian hydrodynamics. Computer Methods in Applied Mechanics and Engineering, 388. 10.1016/j.cma.2021.114259

McBane, S., Choi, Y., Willcox, K. (2022). Stress-constrained topology optimization of lattice-like structures using component-wise reduced order models. Computer Methods in Applied Mechanics and Engineering, 400. 10.1016/j.cma.2022.115525

Kadeethum, T., Ballarin, F., O’Malley, D. and 3 more (Choi, Y.) (2022). Reduced order modeling for flow and transport problems with Barlow Twins self-supervised learning. Scientific Reports, 12(1). 10.1038/s41598-022-24545-3

Kadeethum, T., O'Malley, D., Choi, Y. and 3 more (2022). Continuous conditional generative adversarial networks for data-driven solutions of poroelasticity with heterogeneous material properties. Computers and Geosciences, 167 10.1016/j.cageo.2022.105212

Jekel, C.F., Sterbentz, D.M., Aubry, S. and 3 more (Choi, Y.) (2022). Using conservation laws to infer deep learning model accuracy of Richtmyer-Meshkov instabilities. World Congress in Computational Mechanics and ECCOMAS Congress. 10.23967/eccomas.2022.286

Kritcher, A.L., Young, C.V., Robey, H.F. and 153 more (Gaffney, J.A., Milovich, J.L.) (2022). Design of inertial fusion implosions reaching the burning plasma regime. Nature Physics, 18(3) 251–258. 10.1038/s41567-021-01485-9

Abu-Shawareb, H., Acree, R., Adams, P. and 1,311 more (Gaffney, J., Gunney, B.) (2022). Lawson criterion for ignition exceeded in an inertial fusion experiment. Physical Review Letters, 129(7). 10.1103/PhysRevLett.129.075001

Ingolfsson, H.I., Neale, C., Carpenter, T.S. and 39 more (Liu, S., van Essen, B.C., Bremer, P.-T.) (2022). Machine learning–driven multiscale modeling reveals lipid-dependent dynamics of RAS signaling proteins. Proceedings of the National Academy of Sciences of the United States of America, 119(1). 10.1073/pnas.2113297119

Bak, S., Bertoni, C., Boehm, S. and 21 more ( Doerfert, J., Scogland, T.) (2022). OpenMP application experiences: Porting to accelerated nodes. Parallel Computing, 109. 10.1016/j.parco.2021.102856

Peterson, J.L., Bay, B., Koning, J. and 17 more (Anirudh, R., Bremer, P.-T., Gaffney, J.A., Kailkhura, B., Thiagarajan, J., Van Essen, B., Yeom, J.-S.) (2022). Enabling machine learning-ready HPC ensembles with Merlin. Future Generation Computer Systems, 131255–268. 10.1016/j.future.2022.01.024

Tranquilli, P., Ricketson, L., Chacón, L. (2022). A deterministic verification strategy for electrostatic particle-in-cell algorithms in arbitrary spatial dimensions using the method of manufactured solutions. Journal of Computational Physics, 448. 10.1016/j.jcp.2021.110751

Huber, J., Cornelius, M., Georgakoudis, G. and 5 more (Doerfert, J.) (2022). Efficient execution of OpenMP on GPUs. CGO 2022 - Proceedings of the 2022 IEEE/ACM International Symposium on Code Generation and Optimization, 41–52. 10.1109/CGO53902.2022.9741290

Baranzini, S.E., Börner, K., Morris, J. and 17 more (Pearce, R., Reza, T.) (2022). A biomedical open knowledge network harnesses the power of AI to understand deep human biology. AI Magazine, 43(1) 46–58. 10.1002/aaai.12037

Kwon, D.H., Cadena, J., Nguyen, S. and 6 more (Soper, B.) (2022). COVID-19 outcomes in patients with cancer: Findings from the University of California health system database. Cancer Medicine, 11(11) 2204–2215. 10.1002/cam4.4604

Clark, D.S., Casey, D.T., Weber, C.R. and 14 more (Milovich, J.L.) (2022). Exploring implosion designs for increased compression on the National Ignition Facility using high density carbon ablators. Physics of Plasmas, 29(5). 10.1063/5.0087052

Bhardwaj, K., Verma, N., Trivedi, R. and 1 more (2022). Effect of essential fatty acid blend on circadian variations of ambulatory blood pressure in patients with essential hypertension and coronary artery disease risk markers. Journal of Human Hypertension, 36(3) 289–298. 10.1038/s41371-021-00520-9

Nguyen, K., López, C.A., Neale, C. and 27 more (Bremer, P.-T.) (2022). Exploring CRD mobility during RAS/RAF engagement at the membrane. Biophysical Journal, 121(19) 3630–3650. 10.1016/j.bpj.2022.06.035

Evans, T.M., Siegel, A., Draeger, E.W. and 5 more (2022). A survey of software implementations used by application codes in the Exascale Computing Project. International Journal of High Performance Computing Applications, 36(1) 5–12. 10.1177/10943420211028940

Iwabuchi, K., Youssef, K., Velusamy, K. and 2 more (Gokhale, M., Pearce, R.) (2022). Metall: A persistent memory allocator for data-centric analytics. Parallel Computing, 111. 10.1016/j.parco.2022.102905

Thiagarajan, J.J., Thopalli, K., Rajan, D. and 1 more (2022). Training calibration-based counterfactual explainers for deep learning models in medical image analysis. Scientific Reports, 12(1). 10.1038/s41598-021-04529-5

Tang, Q., Chacón, L., Kolev, T.V. and 2 more (2022). An adaptive scalable fully implicit algorithm based on stabilized finite element for reduced visco-resistive MHD. Journal of Computational Physics, 454. 10.1016/j.jcp.2022.110967

Andrej, J., Grüne, L., Mechelli, L. and 3 more (2022). Parallelized POD-based suboptimal economic model predictive control of a state-constrained Boussinesq approximation. Computers and Mathematics with Applications, 11671–81. 10.1016/j.camwa.2021.09.004

Peng, I.B., Gokhale, M.B., Youssef, K. and 2 more ( Iwabuchi, K., Pearce, R.) (2022). Enabling scalable and extensible memory-mapped datastores in userspace. IEEE Transactions on Parallel and Distributed Systems, 33(4) 866–877. 10.1109/TPDS.2021.3086302

Soper, B.C., Cadena, J., Nguyen, S. and 10 more (2022). Dynamic modeling of hospitalized COVID-19 patients reveals disease state-dependent risk factors. Journal of the American Medical Informatics Association, 29(5) 864–872. 10.1093/jamia/ocac012

Gounley, J., Vardhan, M., Draeger, E.W. and 3 more (2022). Propagation pattern for moment representation of the Lattice Boltzmann Method. IEEE Transactions on Parallel and Distributed Systems, 33(3) 642–653. 10.1109/TPDS.2021.3098456

Keyt, L.K., Duran, J.M., Bui, Q.M. and 5 more (2022). Thin filament cardiomyopathies: A review of genetics, disease mechanisms, and emerging therapeutics. Frontiers in Cardiovascular Medicine, 9. 10.3389/fcvm.2022.972301

Dobrev, V., Knupp, P., Kolev, T., Mittal, K., Tomov, V. (2022). hr-Adaptivity for nonconforming high-order meshes with the target matrix optimization paradigm. Engineering with Computers, 38(4) 3721–3737. 10.1007/s00366-021-01407-6

Kustowski, B., Gaffney, J.A., Spears, B.K. and 6 more (Anirudh, R., Bremer, P.-T., Thiagarajan, J.J.) (2022). Suppressing simulation bias in multi-modal data using transfer learning. Machine Learning: Science and Technology, 3(1). 10.1088/2632-2153/ac5e3e

Doerfert, J., Patel, A., Huber, J. and 4 more (Georgakoudis, G.) (2022). Co-designing an OpenMP GPU runtime and optimizations for near-zero overhead execution. Proceedings - 2022 IEEE 36th International Parallel and Distributed Processing Symposium, IPDPS 2022, 504–514. 10.1109/IPDPS53621.2022.00055

Laguna, I., Li, X., Gopalakrishnan, G. (2022). BinFPE: accurate floating-point exception detection for GPU applications. SOAP 2022 - Proceedings of the 11th ACM SIGPLAN International Workshop on the State of the Art in Program Analysis, co-located with PLDI 2022, 1–8. 10.1145/3520313.3534655

Lanese, I., Schultz, U.P., Ulidowski, I., Schordan, M. (2022). Reversible computing in debugging of Erlang programs. IT Professional, 24(1) 74–80. 10.1109/MITP.2021.3117920

Liu, S., Kailkhura, B., Zhang, J. and 5 more (2022). Attribution-driven explanation of the deep neural network model via conditional microstructure image synthesis. ACS Omega, 7(3) 2624–2637. 10.1021/acsomega.1c04796

Ranjan, P., Mittal, K., Chamorro, L.P. and 1 more (2022). Impact of gaps on the flow statistics in an emergent rigid canopy. Physics of Fluids, 34(6). 10.1063/5.0088527

López, C.A., Zhang, X., Aydin, F. and 23 more (2022). Asynchronous reciprocal coupling of Martini 2.2 coarse-grained and CHARMM36 all-atom simulations in an automated multiscale framework. Journal of Chemical Theory and Computation, 18(8) 5025–5045. 10.1021/acs.jctc.2c00168

Gardner, D.J., Reynolds, D.R., Woodward, C.S., Balos, C.J. (2022). Enabling new flexibility in the SUNDIALS Suite of Nonlinear and Differential/Algebraic Equation Solvers. ACM Transactions on Mathematical Software, 48(3). 10.1145/3539801

Kolev, T., Pazner, W. (2022). Conservative and accurate solution transfer between high-order and low-order refined finite element spaces. SIAM Journal on Scientific Computing, 44(1) A1–A27. 10.1137/21M1403916

Herbein, S., Patki, T., Ahn, D.H. and 8 more (Scogland, T.R.W., de Supinski, B.R.) (2022). An analytical performance model of generalized hierarchical scheduling. International Journal of High Performance Computing Applications, 36(3) 289–306. 10.1177/10943420211051039

Hessenthaler, A., Falgout, R.D., Schroder, J.B. and 3 more (2022). Time-periodic steady-state solution of fluid-structure interaction and cardiac flow problems through multigrid-reduction-in-time. Computer Methods in Applied Mechanics and Engineering, 389. 10.1016/j.cma.2021.114368

Perez-Martin, P., Šmíd, M., Bouffetier, V. and 23 more (Holec, M.) (2022). Characterization of low-density rear-driven collisional plasma jets from thin foils. 48th EPS Conference on Plasma Physics, EPS 2022

Christopher, J., Gao, X., Falgout, R.D. and 2 more (2022). Applying time-parallelization to turbulent flows. AIAA Science and Technology Forum and Exposition, AIAA SciTech Forum 2022, 1–13. 10.2514/6.2022-0193

Schutte, H., Phelps, C., Marathe, A. and 1 more (2022). LIBNVCD: An extendable and user-friendly multi-GPU performance measurement tool. Proceedings - 2022 IEEE 46th Annual Computers, Software, and Applications Conference, COMPSAC 2022, 73–82. 10.1109/COMPSAC54236.2022.00019

Crum, J., Cheng, C., Ham, D.A. and 4 more (Gillette, A.) (2022). Bringing trimmed serendipity methods to computational practice in Firedrake. ACM Transactions on Mathematical Software, 48(1). 10.1145/3490485

Diffenderfer, J., Osei-Kuffuor, D., Menon, H. (2022). A framework for error for error-bound approximate computing, with an application to DOT products. SIAM Journal on Scientific Computing, 44(3) A1290–A1314. 10.1137/21M1406994

Rivera, D., Bernstein, J., Schmidt, K. and 5 more (Kupresanin, A.) (2022). Bayesian calibration of strength model parameters from Taylor impact data. Computational Materials Science, 210. 10.1016/j.commatsci.2021.110999

Youssef, K., Shah, N., Gokhale, M. and 2 more ( Pearce, R.) (2022). AutoPager: auto-tuning memory-mapped I/O parameters in userspace. 2022 IEEE High Performance Extreme Computing Conference, HPEC 2022. 10.1109/HPEC55821.2022.9926409

Chakraborty, I., Joo, J.-Y. (2022). Data-driven detection of low-current arcing events in power distribution systems. Proceedings of the IEEE Power Engineering Society Transmission and Distribution Conference, 2022–. 10.1109/TD43745.2022.9816885

Shi, J., Li, R., Xi, Y. and 2 more (2022). A non-perturbative approach to computing seismic normal modes in rotating planets. Journal of Scientific Computing, 91(2). 10.1007/s10915-022-01836-5

Pazner, W., Kolev, T. (2022). Uniform subspace correction preconditioners for discontinuous Galerkin methods with hp-refinement. Communications on Applied Mathematics and Computation, 4(2) 697–727. 10.1007/s42967-021-00136-3

Vargas, A., Stitt, T.M., Weiss, K. and 4 more (Tomov, V.Z., Camier, J.-S., Kolev, T.) (2022). Matrix-free approaches for GPU acceleration of a high-order finite element hydrodynamics application using MFEM, Umpire, and RAJA. International Journal of High Performance Computing Applications, 36(4) 492–509. 10.1177/10943420221100262

Li, Z., Menon, H., Mohror, K. and 4 more ( Liu, S., Bremer, P.) (2022). A visual comparison of silent error propagation. IEEE Transactions on Visualization and Computer Graphics, 1–15. 10.1109/TVCG.2022.3230636

Zhu, J., Koutra, D., Heimann, M. (2022). CAPER: coarsen, align, project, refine – a general multilevel framework for network alignment. International Conference on Information and Knowledge Management, Proceedings, 4747–4751. 10.1145/3511808.3557563

Wang, S., Yuan, G., Ma, X. and 3 more (Kailkhura, B.) (2022). Fault-tolerant deep neural networks for processing-in-memory based autonomous edge systems. Proceedings of the 2022 Design, Automation and Test in Europe Conference and Exhibition, DATE 2022, 424–429. 10.23919/DATE54114.2022.9774523

Southworth, B.S., Krzysik, O., Pazner, W. (2022). Fast solution of fully implicit Runge-Kutta and discontinuous Galerkin in time for numerical PDES, part II: nonlinearities and DAEs. SIAM Journal on Scientific Computing, 44(2) A636–A663. 10.1137/21M1390438

Yeom, J.-S., Ahn, D.H., Lumsden, I. and 3 more (2022). Ubique: a new model for untangling inter-task data dependence in complex HPC workflows. Proceedings - 2022 IEEE 18th International Conference on e-Science, eScience 2022, 421–422. 10.1109/eScience55777.2022.00068

Zylstra, A.B., Hurricane, O.A., Callahan, D.A. and 153 more (Gaffney, J.) (2022). Publisher correction: burning plasma achieved in inertial fusion (Nature, (2022), 601, 7894, (542-–548), 10.1038/s41586-021-04281-w). Nature, 603(7903). 10.1038/s41586-022-04607-2

Xu, T., Kalantzis, V., Li, R. and 3 more (2022). parGeMSLR: A parallel multilevel Schur complement low-rank preconditioning and solution package for general sparse matrices. Parallel Computing, 113. 10.1016/j.parco.2022.102956

Chowdhury, F., Di Natale, F., Moody, A. and 2 more (Mohror, K.) (2022). DFMan: A graph-based optimization of dataflow scheduling on high-performance computing systems. Proceedings - 2022 IEEE 36th International Parallel and Distributed Processing Symposium, IPDPS 2022, 368–378. 10.1109/IPDPS53621.2022.00043

Liu, S., Anirudh, R., Thiagarajan, J.J., Bremer, P.-T.) (2022). Spartsity improves unsupervised discovery in Stylegan. ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing – Proceedings, 2022–3388–3392. 10.1109/ICASSP43922.2022.9746150

Youssef, K., Raqibul Islam, A.A., Iwabuchi, K. and 2 more (Pearce, R.) (2022). Optimizing performance and storage of memory-mapped persistent data structures. 2022 IEEE High Performance Extreme Computing Conference, HPEC 2022. 10.1109/HPEC55821.2022.9926392

Antoniuk, E.R., Li, P., Kailkhura, B. and 1 more (2022). Representing polymers as periodic graphs with learned descriptors for accurate polymer property predictions. Journal of Chemical Information and Modeling, 62(22) 5435–5445. 10.1021/acs.jcim.2c00875

Green, D., Hu, X., Lore, J. and 2 more (Stowell, M.L.) (2022). An efficient high-order numerical solver for diffusion equations with strong anisotropy. Computer Physics Communications, 276. 10.1016/j.cpc.2022.108333

Nichols, D., Marathe, A., Shoga, K. and 2 more (2022). Resource utilization aware job scheduling to mitigate performance variability. Proceedings - 2022 IEEE 36th International Parallel and Distributed Processing Symposium, IPDPS 2022, 335–345. 10.1109/IPDPS53621.2022.00040

Petra, C.G., Salazar De Troya, M., Petra, N. and 3 more (Choi, Y.) (2022). On the implementation of a quasi-Newton interior-point method for PDE-constrained optimization using finite element discretizations. Optimization Methods and Software. 10.1080/10556788.2022.2117354

Matsuoka, S., Domke, J., Wahib, M. and 7 more (Mohror, K.) (2022). Preparing for the future - rethinking proxy applications. Computing in Science and Engineering, 24(2) 85–90. 10.1109/MCSE.2022.3153105

Li, Q., Kailkhura, B., Goldhahn, R. and 2 more (2022). Robust decentralized learning using ADMM with unreliable agents. IEEE Transactions on Signal Processing, 702743–2757. 10.1109/TSP.2022.3178655

Ladd, A., Chakraborty, I. (2022). Gridds: a data science toolkit for energy grid machine learning. e-Energy 2022 - Proceedings of the 2022 13th ACM International Conference on Future Energy Systems, 542–551. 10.1145/3538637.3539614

Tran, K., Sakla, W., Krim, H. (2022). SAR self-enhanced by electro-optical network (SARSEEN). Proceedings of SPIE - The International Society for Optical Engineering, 12122. 10.1117/12.2618829

Di Siena, A., Bañón Navarro, A., Luda, T. and 13 more (Hittinger, J.) (2022). Global gyrokinetic simulations of ASDEX upgrade up to the transport timescale with GENE-Tango. Nuclear Fusion, 62(10). 10.1088/1741-4326/ac8941

Devi, S., Thopalli, K., Malarvezhi, P., Thiagarajan, J.J. (2022). Improving single-stage object detectors for nighttime pedestrian detection. International Journal of Pattern Recognition and Artificial Intelligence, 36(9). 10.1142/S0218001422500343

Georgakoudis, G., Scogland, T.R.W., Liao, C., de Supinski, B.R. (2022). Extending OpenMP to support automated function specialization across translation units. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 13527159–173. 10.1007/978-3-031-15922-0_11

Devarajan, H., Mohror, K. (2022). Extracting and characterizing I/O behavior of HPC workloads. Proceedings - IEEE International Conference on Cluster Computing, ICCC, 2022 243–255. 10.1109/CLUSTER51413.2022.00037

Brust, J.J., Marcia, R.F., Petra, C.G. and 1 more (2022). Large-scale optimization with linear equality constraints using reduced compact representation. SIAM Journal on Scientific Computing, 44(1) A103–A127. 10.1137/21M1393819

Balos, C.J., Luszczek, P., Osborn, S. and 2 more (Yang, U.M.) (2022). Challenges of and opportunities for a large diverse software team. Computing in Science and Engineering, 24(3) 16–24. 10.1109/MCSE.2022.3172873

Zaman, S., Moon, T., Benson, T. and 3 more (Van Essen, B.) (2022). Parallelizing graph neural networks via matrix compaction for edge-conditioned networks. Proceedings - 22nd IEEE/ACM International Symposium on Cluster, Cloud and Internet Computing, CCGrid 2022, 386–395. 10.1109/CCGrid54584.2022.00048

Southworth, B.S., Krzysik, O., Pazner, W. and 1 more (2022). Fast solution of fully implicit Runge-Kutta an discontinuous Galerkin in time for numerical PDES, part I: the linear setting. SIAM Journal on Scientific Computing, 44(1) A416–A443. 10.1137/21M1389742

Hong, K.N., Battikha, C., John, S. and 16 more (2022). Cardiac transplantation in Danon Disease. Journal of Cardiac Failure, 28(4) 664–669. 10.1016/j.cardfail.2021.11.007

Lin, P.-H., Liao, C, Chen, W. . and 3 more (2022). Making machine learning datasets and models FAIR for HPC: a methodology and case study. Proceedings - 2022 4th International Conference on Transdisciplinary AI, TransAI 2022, 128–134. 10.1109/TransAI54797.2022.00029

Knueven, B., Ostrowski, J., Castillo, A., Watson, J.-P. (2022). A computationally efficient algorithm for computing convex hull prices. Computers and Industrial Engineering, 163. 10.1016/j.cie.2021.107806

Roychowdhury, S., Draeger, E.W., Randles, A. (2022). Establishing metrics to quantify underlying structure in vascular red blood cell distributions. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 1335089–102. 10.1007/978-3-031-08751-6_7

Chakraborty, I., Kelley, B.M., Gallagher, B. (2022). Device classification for industrial control systems using predicted traffic features. Frontiers in Computer Science, 4. 10.3389/fcomp.2022.777089

Bhardwaj, K., Diffenderfer, J., Kailkhura, B., Gokhale, M. (2022). Benchmarking test-time unsupervised deep neural network adaptation on edge devices. Proceedings - 2022 IEEE International Symposium on Performance Analysis of Systems and Software, ISPASS 2022, 236–238. 10.1109/ISPASS55109.2022.00033

Anirudh, R., Krishnan, M., Kekuda, A. (2022). Intelligent traffic control system using deep reinforcement learning. 2022 International Conference on Innovative Trends in Information Technology, ICITIIT 2022. 10.1109/ICITIIT54346.2022.9744226

Tsiokanos, I., Tompazi, S., Georgakoudis, G. and 2 more (2022). ARETE: Accurate error assessment via machine learning-guided dynamic-timing analysis. IEEE Transactions on Computers, 1–14. 10.1109/TC.2022.3191966

Laguna, I., Tirpankar, T., Li, X., Gopalakrishnan, G. (2022). FPChecker: Floating-point exception detection tool and benchmark for parallel and distributed HPC. Proceedings - 2022 IEEE International Symposium on Workload Characterization, IISWC 2022, 39–50. 10.1109/IISWC55918.2022.00014

Ahn, D.H., Zhang, X., Mast, J. and 10 more (Milroy, D.J., De Supinski, B., Van Essen, B.) (2022). Scalable composition and analysis techniques for massive scientific workflows. Proceedings - 2022 IEEE 18th International Conference on e-Science, eScience 2022, 32–43. 10.1109/eScience55777.2022.00018

Koshkarov, O., Chacón, L., Chen, G., Ricketson, L.F. (2022). Fast nonlinear iterative solver for an implicit, energy-conserving, asymptotic-preserving charged-particle orbit integrator. Journal of Computational Physics, 459. 10.1016/j.jcp.2022.111146

Jacobson, J., Bentley, M., Lund, C. and 3 more (Gopalakrishnan, G., Laguna, I.) (2022). FLoAT: framework for workflow analysis, visualization and transformation. Proceedings - 2022 1st International Workshop on Visualization in Testing of Hardware, Software, and Manufacturing, TestVis 2022, 22–27. 10.1109/TestVis57757.2022.00009

Zhu, B., Zhao, M., Bhatia, H. and 5 more (Bremer, P.-T.) (2022). Data-driven model for divertor plasma detachment prediction. Journal of Plasma Physics, 88(5). 10.1017/S002237782200085X

Regev, S., Chiang, N.-Y., Darve, E. and 4 more (Petra, C.G.) (2022). HyKKT: a hybrid direct-iterative method for solving KKT linear systems. Optimization Methods and Software. 10.1080/10556788.2022.2124990

Bhatia, H., Thiagarajan, J.J., Anirudh, R. and 5 more (Jayram, T.S., Bremer, P.-T.) (2022). A biology-informed similarity metric for simulated patches of human cell membrane. Machine Learning: Science and Technology, 3(3). 10.1088/2632-2153/ac8523

Rueda-Ramírez, A.M., Pazner, W., Gassner, G.J. (2022). Subcell limiting strategies for discontinuous Galerkin spectral element methods. Computers and Fluids, 247. 10.1016/j.compfluid.2022.105627

Christopher, J., Davis, A., Ghosh, D. and 4 more ( Dorr, M., Ricketson, L.) (2022). On preconditioning for the two-field neutral model. AIAA Science and Technology Forum and Exposition, AIAA SciTech Forum 2022. 10.2514/6.2022-1108

Sun, J., Mehra, A., Kailkhura, B. and 4 more (2022). A spectral view of randomized smoothing under common corruptions: benchmarking and improving certified robustness. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 13664654–671. 10.1007/978-3-031-19772-7_38

Zhong, X.,Gallagher, B., Liu, S., and 3 more ( Kailkhura, B.) (2022). Explainable machine learning in materials science. npj Computational Materials, 8(1). 10.1038/s41524-022-00884-7

Reza, T., Sanders, G., Pearce, R. (2022). Towards distributed 2-approximation Steiner minimal trees in billion-edge graphs. Proceedings - 2022 IEEE 36th International Parallel and Distributed Processing Symposium, IPDPS 2022, 549–559. 10.1109/IPDPS53621.2022.00060

Liao, C., Wang, A., Georgakoudis, G. and 4 more (de Supinski, B.R., Beckingsale, D.) (2022). Extending OpenMP for machine learning-driven adaptation. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 1319449–69. 10.1007/978-3-030-97759-7_3

Narayanaswamy, V., Anirudh, R., Kim, I. and 3 more (Thiagarajan, J.J.) (2022). Predicting the generalization gap in deep models using anchoring. ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing – Proceedings, 2022-4393-4397. 10.1109/ICASSP43922.2022.9747136

Cheng, H., Xu, K., Li, Z. and 5 more (Wang, C., Kailkhura, B.) (2022). More or Less (MoL): defending against multiple perturbation attacks on deep neural networks through model ensemble and compression. Proceedings - 2022 IEEE/CVF Winter Conference on Applications of Computer Vision Workshops, WACVW 2022, 645–655. 10.1109/WACVW54805.2022.00071

Bhatia, H., Hoang, D., Morrical, N. and 3 more (Bremer, P.-T., Lindstrom, P.) (2022). AMM: adaptive multilinear meshes. IEEE Transactions on Visualization and Computer Graphics, 28(6) 2350–2363. 10.1109/TVCG.2022.3165392

Menon, H., Parasyris, K., Scogland, T. and 1 more (2022). Searching for high-fidelity builds using active learning. Proceedings - 2022 Mining Software Repositories Conference, MSR 2022, 179–190. 10.1145/3524842.3528464

Lee, C.S., Hamon, F.P., Castelletto, N. and 2 more (2022). An aggregation-based nonlinear multigrid solver for two-phase flow and transport in porous media. Computers and Mathematics with Applications, 113282–299. 10.1016/j.camwa.2022.03.026

Landen, M., Chung, K., Ike, M. and 3 more (McKay, S., Watson, J.-P.) (2022). DRAGON: deep reinforcement learning for autonomous grid operation and attack detection. ACM International Conference Proceeding Series, 13–27. 10.1145/3564625.3567969

Baker, K.L., Jones, O., Weber, C. and 39 more (Gaffney, J.) (2022). Hydroscaling indirect-drive implosions on the National Ignition Facility. Physics of Plasmas, 29(6). 10.1063/5.0080732

Francom, D., Sansó, B., Kupresanin, A. (2022). Landmark-warped emulators for models with misaligned functional response. SIAM-ASA Journal on Uncertainty Quantification, 10(1) 125–150. 10.1137/20M135279X

Brink, S. (2022). AI for datacenter optimization (ADOPT'22). Proceedings - 2022 IEEE 36th International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2022. 10.1109/IPDPSW55747.2022.00119

Puleri, D.F., Roychowdhury, S., Balogh, P. and 10 more (Draeger, E.) (2022). High performance adaptive physics refinement to enable large-scale tracking of cancer cell trajectory. Proceedings - IEEE International Conference on Cluster Computing, ICCC, 2022-230-242. 10.1109/CLUSTER51413.2022.00036

Barnes, P. (2022). Challenges in simulating communication systems state of the art and open challenges in simulating network and communications systems. ACM International Conference Proceeding Series, 118–125. 10.1145/3518997.3534120

Lumsden, I., Luettgau, J., Lama, V. and 5 more (Brink, S., Pearce, O.) (2022). Enabling call path querying in Hatchet to identify performance bottlenecks in scientific applications. Proceedings - 2022 IEEE 18th International Conference on e-Science, eScience 2022, 256–266. 10.1109/eScience55777.2022.00039

Bhardwaj, K., Diffenderfer, J., Kailkhura, B., Gohkale, M. (2022). Unsupervised test-time adaptation of deep neural networks at the edge: a case study. Proceedings of the 2022 Design, Automation and Test in Europe Conference and Exhibition, DATE 2022, 412–417. 10.23919/DATE54114.2022.9774580

Balos, C.J. (2022). Reproduced computational results report for “Ginkgo: A modern linear operator algebra framework for high performance computing.” ACM Transactions on Mathematical Software, 48(1). 10.1145/3480936

Meng, R.,Soper, B. , Lee H.K.H. and 2 more (2022). Hierarchical continuous-time inhomogeneous hidden Markov model for cancer screening with extensive follow-up data. Statistical Methods in Medical Research, 31(12) 2383–2399. 10.1177/09622802221122390

Choi, Y., Brown, P., Arrighi, W. and 2 more (2021). Space–time reduced order model for large-scale linear dynamical systems with application to Boltzmann transport problems. Journal of Computational Physics, 424. 10.1016/j.jcp.2020.109845

Kadeethum, T., O’Malley, D., Fuhg, J.N. and 4 more (Choi, Y.) (2021). A framework for data-driven solution and parameter estimation of PDEs using conditional generative adversarial networks. Nature Computational Science, 1(12), 819–829. 10.1038/s43588-021-00171-3

McBane, S., Choi, Y. (2021). Component-wise reduced order model lattice-type structure design. Computer Methods in Applied Mechanics and Engineering, 381. 10.1016/j.cma.2021.113813

Hoang, C., Choi, Y., Carlberg, K. (2021). Domain-decomposition least-squares Petrov–Galerkin (DD-LSPG) nonlinear model reduction. Computer Methods in Applied Mechanics and Engineering, 384. 10.1016/j.cma.2021.113997

Kim, Y., Wang, K., Choi, Y. (2021). Efficient space–time reduced order model for linear dynamical systems in python using less than 120 lines of code. Mathematics, 9(14). 10.3390/math9141690

Anderson, R., Andrej, J., Barker, A. and 14 more (Bramwell, J, Camier, J, Cerveny, J, Dobrev, V, Dudouit, Y, Fisher, A, Kolev, T, Pazner, W, Stowell, M, Tomov, V) (2021). MFEM: A modular finite element methods library. Computers and Mathematics with Applications, 8142–74. 10.1016/j.camwa.2020.06.009

Fabregat, A., Gisbert, F., Vernet, A. and 3 more (Mittal, K) (2021). Direct numerical simulation of the turbulent flow generated during a violent expiratory event. Physics of Fluids, 33(3). 10.1063/5.0042086

Casey, D.T., MacGowan, B.J., Sater, J.D. and 30 more (...) (2021). Evidence of three-dimensional asymmetries seeded by high-density carbon-ablator nonuniformity in experiments at the National Ignition Facility. Physical Review Letters, 126(2). 10.1103/PhysRevLett.126.025002

McCallen, D., Petersson, A., Rodgers, A. and 6 more (Sjogreen, B) (2021). EQSIM: A multidisciplinary framework for fault-to-structure earthquake simulations on exascale computers, part I: Computational models and workflow. Earthquake Spectra, 37(2), 707–735. 10.1177/8755293020970982

Fabregat, A., Gisbert, F., Vernet, A. and 4 more (Mittal, K) (2021). Direct numerical simulation of turbulent dispersion of evaporative aerosol clouds produced by an intense expiratory event. Physics of Fluids, 33(3). 10.1063/5.0045416

Ammirati, E., Brambatti, M., Braun, O.Ö. and 39 more (...) (2021). Outcome of patients on heart transplant list treated with a continuous-flow left ventricular assist device: Insights from the TRans-Atlantic registry on VAd and TrAnsplant (TRAViATA). International Journal of Cardiology, 324122–130. 10.1016/j.ijcard.2020.09.026

Świrydowicz, K., Langou, J., Ananthan, S. and 2 more (Yang, U) (2021). Low synchronization Gram–Schmidt and generalized minimal residual algorithms. Numerical Linear Algebra with Applications, 28(2). 10.1002/nla.2343

Bhatia, H.S., Bui, Q.M., King, K. and 2 more (...) (2021). Subclinical left ventricular dysfunction in COVID-19. IJC Heart and Vasculature, 34. 10.1016/j.ijcha.2021.100770

Abdelfattah, A., Anzt, H., Boman, E.G. and 18 more (Fox, A, Tomov, V, Yang, U) (2021). A survey of numerical linear algebra methods utilizing mixed-precision arithmetic. International Journal of High Performance Computing Applications, 35(4), 344–369. 10.1177/10943420211003313

Dominski, J., Cheng, J., Merlo, G. and 19 more (Ricketson, L, Choi, J, Hittinger, J) (2021). Spatial coupling of gyrokinetic simulations, a generalized scheme based on first-principles. Physics of Plasmas, 28(2). 10.1063/5.0027160

Sultana, N., Rüfenacht, M., Skjellum, A. and 3 more (Laguna, I, Mohror, K) (2021). Understanding the use of message passing interface in exascale proxy applications. Concurrency and Computation: Practice and Experience, 33(14). 10.1002/cpe.5901

Oyama, Y., Maruyama, N., Dryden, N. and 6 more (Van Essen, B) (2021). The case for strong scaling in deep learning: training large 3D CNNs with hybrid parallelism. IEEE Transactions on Parallel and Distributed Systems, 32(7), 1641–1652. 10.1109/TPDS.2020.3047974

Milovich, J.L., Casey, D.C., Macgowan, B. and 11 more (...) (2021). Understanding asymmetries using integrated simulations of capsule implosions in low gas-fill hohlraums at the National Ignition Facility. Plasma Physics and Controlled Fusion, 63(2). 10.1088/1361-6587/abcdfb

Hoang, D., Summa, B., Bhatia, H. and 5 more (Lindstrom, P, Bremer, T) (2021). Efficient and flexible hierarchical data layouts for a unified encoding of scalar field precision and resolution. IEEE Transactions on Visualization and Computer Graphics, 27(2), 603–613. 10.1109/TVCG.2020.3030381

Roberts, S., Loffeld, J., Sarshar, A. and 2 more (Woodward, C) (2021). Implicit multirate GARK methods. Journal of Scientific Computing, 87(1). 10.1007/s10915-020-01400-z

Jacobs, S.A., Moon, T., McLoughlin, K. and 9 more (Hysom, D, Ahn, D, Watson, P, Karlin, I, Van Essen, B) (2021). Enabling rapid COVID-19 small molecule drug design through scalable deep learning of generative models. International Journal of High Performance Computing Applications, 35(5), 469–482. 10.1177/10943420211010930

Rao, S., Narayanaswamy, V., Esposito, M. and 2 more (Thiagarajan, J) (2021). Deep learning with hyper-parameter tuning for COVID-19 cough detection. IISA 2021: 12th International Conference on Information, Intelligence, Systems and Applications. 10.1109/IISA52424.2021.9555564

Lohit, S., Anirudh, R., Turaga, P. (2021). Recovering trajectories of unmarked joints in 3d human actions using latent space optimization. Proceedings: 2021 IEEE Winter Conference on Applications of Computer Vision, WACV 2021, 2341–2350. 10.1109/WACV48630.2021.00239

Casey, D.T., Landen, O.L., Hartouni, E. and 27 more (Gaffney, J) (2021). Three dimensional low-mode areal-density non-uniformities in indirect-drive implosions at the National Ignition Facility. Physics of Plasmas, 28(4). 10.1063/5.0043589

Bhatia, H., Carpenter, T.S., Ingólfsson, H.I. and 9 more (Van Essen, B, Bremer, T) (2021). Machine-learning-based dynamic-importance sampling for adaptive multiscale simulations. Nature Machine Intelligence, 3(5), 401–409. 10.1038/s42256-021-00327-w

Ahn, D.H., Baker, A.H., Bentley, M. and 7 more (Gopalakrishnan, G, Laguna, I, Milroy, D) (2021). Keeping science on keel when software moves. Communications of the ACM, 64(2), 66–74. 10.1145/3382037

De Sterck, H., Falgout, R.D., Friedhoff, S. and 2 more (...) (2021). Optimizing multigrid reduction-in-time and Parareal coarse-grid operators for linear advection. Numerical Linear Algebra with Applications, 28(4). 10.1002/nla.2367

Li, Z., Menon, H., Mohror, K. and 3 more (Bremer, T) (2021). Understanding a program's resiliency through error propagation. Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, PPOPP, 362–373. 10.1145/3437801.3441589

Pazner, W. (2021). Sparse invariant domain preserving discontinuous Galerkin methods with subcell convex limiting. Computer Methods in Applied Mechanics and Engineering, 382. 10.1016/j.cma.2021.113876

Nguyen, H.T., Bhatele, A., Jain, N. and 5 more (Bhatia, H, Gamblin, T, Bremer, T) (2021). Visualizing hierarchical performance profiles of parallel codes Using CallFlow. IEEE Transactions on Visualization and Computer Graphics, 27(4), 2455–2468. 10.1109/TVCG.2019.2953746

McInnes, L.C., Heroux, M.A., Draeger, E.W. and 3 more (...) (2021). How community software ecosystems can unlock the potential of exascale computing. Nature Computational Science, 1(2), 92–94. 10.1038/s43588-021-00033-y

Mittal, K., Dutta, S., Fischer, P. (2021). Multirate timestepping for the incompressible Navier-Stokes equations in overlapping grids. Journal of Computational Physics, 437. 10.1016/j.jcp.2021.110335

Jones, O.S., Kemp, G.E., Langer, S.H. and 11 more (...) (2021). Experimental and calculational investigation of laser-heated additive manufactured foams. Physics of Plasmas, 28(2). 10.1063/5.0032023

Zhu, J., Lu, X., Heimann, M. and 1 more (...) (2021). Node proximity is all you need: Unified structural and positional node and graph embedding. SIAM International Conference on Data Mining, SDM 2021, 163–171.

Cadena, J., Ray, P., Chen, H. and 4 more (Soper, B) (2021). Stochastic gradient-based distributed Bayesian estimation in cooperative sensor networks. IEEE Transactions on Signal Processing, 691713–1724. 10.1109/TSP.2021.3058765

Rajan, D., Thiagarajan, J.J., Karargyris, A. and 1 more (...) (2021). Self-training with improved regularization for sample-efficient chest x-ray classification. Progress in Biomedical Optics and Imaging - Proceedings of SPIE, 11597. 10.1117/12.2582290

Mniszewski, S.M., Belak, J., Fattebert, J.-L. and 21 more (...) (2021). Enabling particle applications for exascale computing platforms. International Journal of High Performance Computing Applications, 35(6), 572–597. 10.1177/10943420211022829

Mehra, A., Kailkhura, B., Chen, P.-Y. and 1 more (...) (2021). How robust are randomized smoothing-based defenses to data poisoning? Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 13239–13248. 10.1109/CVPR46437.2021.01304

Larsen, M., Harrison, C., Turton, T.L. and 3 more (Brink, S) (2021). Trigger happy: Assessing the viability of trigger-based in situ analysis. Proceedings - 2021 IEEE 11th Symposium on Large Data Analysis and Visualization, LDAV 2021, 22–31. 10.1109/LDAV53230.2021.00010

Dubey, A., McInnes, L.C., Thakur, R. and 4 more (Draeger, E) (2021). Performance portability in the Exascale Computing Project: Exploration through a panel series. Computing in Science and Engineering, 23(5), 46–54. 10.1109/MCSE.2021.3098231

Balos, C.J., Gardner, D.J., Woodward, C.S. and 1 more (Reynolds, D) (2021). Enabling GPU-accelerated computing in the SUNDIALS time integration library. Parallel Computing, 108. 10.1016/j.parco.2021.102836

Barker, A.T., Kolev, T. (2021). Matrix-free preconditioning for high-order H(curl) discretizations. Numerical Linear Algebra with Applications, 28(2). 10.1002/nla.2348

Kolev, T., Fischer, P., Min, M. and 27 more (Dobrev, V, Karlin, I, Pazner, W, Tomov, V) (2021). Efficient exascale discretizations: High-order finite element methods. International Journal of High Performance Computing Applications, 35(6), 527–552. 10.1177/10943420211020803

Mitchell, W.B., Strzodka, R., Falgout, R.D. (2021). Parallel performance of algebraic multigrid domain decomposition. Numerical Linear Algebra with Applications, 28(3). 10.1002/nla.2342

Ortega, J., Salari, K. (2021). Experimental investigation of the aerodynamic benefits of truck platooning: Two- and four-vehicle platoons. SAE Technical Papers. 10.4271/2021-01-0942

Narayanaswamy, V., Thiagarajan, J.J., Spanias, A. (2021). Using deep image priors to generate counterfactual explanations. ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing – Proceedings, 2021-2770-2774. 10.1109/ICASSP39728.2021.9413636

Milovich, J.L., Jones, O.S., Berger, R.L. and 9 more (...) (2021). Simulation studies of the interaction of laser radiation with additively manufactured foams. Plasma Physics and Controlled Fusion, 63(5). 10.1088/1361-6587/abe353

Wang, C., Mohror, K., Snir, M. (2021). File system semantics requirements of HPC applications. HPDC 2021 - Proceedings of the 30th International Symposium on High-Performance Parallel and Distributed Computing, 19–30. 10.1145/3431379.3460637

Muniraju, G., Kailkhura, B., Thiagarajan, J.J. and 3 more (Bremer, T) (2021). Coverage-based designs improve sample mining and hyperparameter optimization. IEEE Transactions on Neural Networks and Learning Systems, 32(3), 1241–1253. 10.1109/TNNLS.2020.2982936

Jia, R., Wu, F., Sun, X. and 6 more (Kailkhura, B) (2021). Scalability vs. utility: Do we have to sacrifice one for the other in data importance quantification? Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 8235–8243. 10.1109/CVPR46437.2021.00814

Bui, Q.M., Ang, L., Phreaner, N. (2021). A case report of cardiogenic shock from takotsubo cardiomyopathy with left ventricular outflow tract obstruction: Fundamental lessons in cardiac pathophysiology. European Heart Journal - Case Reports, 5(4). 10.1093/ehjcr/ytab127

Steil, .T., Reza, .T., Iwabuchi, .K. and 3 more (Priest, B, Sanders, G, Pearce, R) (2021). Tripoll: Computing surveys of triangles in massive-scale temporal graphs with metadata. International Conference for High Performance Computing, Networking, Storage and Analysis, SC. 10.1145/3458817.3476200

Jain, A., Moon, T., Benson, T. and 4 more (Jacobs, S.A) (2021). SUPER: SUb-graph parallelism for TransformERs. Proceedings - 2021 IEEE 35th International Parallel and Distributed Processing Symposium, IPDPS 2021, 629–638. 10.1109/IPDPS49936.2021.00071

Landen, O.L., Lindl, J.D., Haan, S.W. and 18 more (...) (2021). Fuel convergence sensitivity in indirect drive implosions. Physics of Plasmas, 28(4). 10.1063/5.0033256

Alexander, F.J., Ang, J., Bilbrey, J.A. and 44 more (Van Essen, B) (2021). Co-design Center for Exascale Machine Learning Technologies (ExaLearn). International Journal of High Performance Computing Applications, 35(6), 598–616. 10.1177/10943420211029302

Savoie, L., Lowenthal, D.K., De Supinski, B.R. and 2 more (Mohror, K) (2021). Mitigating inter-job interference via process-level quality-of-service. ACM Transactions on Parallel Computing, 8(1). 10.1145/3434397

Fairbanks, H.R., Osborn, S., Vassilevski, P.S. (2021). Estimating posterior quantity of interest expectations in a multilevel scalable framework. Numerical Linear Algebra with Applications, 28(3). 10.1002/nla.2352

Li, Z., Menon, H., Maljovec, D. and 5 more (Mohror, K, Bremer, P-T) (2021). SpotSDC: Revealing the silent data corruption propagation in high-performance computing systems. IEEE Transactions on Visualization and Computer Graphics, 27(10), 3938–3952. 10.1109/TVCG.2020.2994954

Schafelner, A., Vassilevski, P.S. (2021). Numerical results for adaptive (negative norm) constrained first order system least squares formulations. Computers and Mathematics with Applications, 95256–270. 10.1016/j.camwa.2020.08.025

Ricketson, L., Hakim, A., Hittinger, J. and 1 more (...) (2021). Consistent coupling algorithms for coupled core-edge simulations of plasma turbulence. Physics of Plasmas, 28(1). 10.1063/5.0027670

Aravena, I., Chapin, S.J., Ponce, C. (2021). Decentralized failure-tolerant optimization of electric vehicle charging. IEEE Transactions on Smart Grid, 12(5), 4068–4078. 10.1109/TSG.2021.3080583

Nathan, E. (2021). A dynamic algorithm for linear algebraically computing nonbacktracking walk centrality. Studies in Computational Intelligence, 944664–674. 10.1007/978-3-030-65351-4_53

Watson, J.-P., Hart, W.E., Greenberg, H.J. and 1 more (...) (2021). An analysis of multiple contaminant warning system design objectives for sensor placement optimization in water distribution networks. International Series in Operations Research and Management Science, 295125–145. 10.1007/978-3-030-56429-2_7

Huber, J., Wei, W., Georgakoudis, G. and 2 more (...) (2021). A case study of LLVM-based analysis for optimizing SIMD code generation. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 12870142–155. 10.1007/978-3-030-85262-7_10

Quinlan, K.R., Movva, J., Stein, E.V. and 1 more (Kupresanin, A) (2021). Leveraging multi-fidelity aerodynamic databasing to efficiently represent a hypersonic design space. Accelerating Space Commerce, Exploration, and New Discovery Conference, ASCEND 2021. 10.2514/6.2021-4245

Anirudh, R., Thiagarajan, J.J., Sridhar, R. and 1 more (Bremer, P-T) (2021). MARGIN: Uncovering deep neural networks using graph signal analysis. Frontiers in Big Data, 4. 10.3389/fdata.2021.589417

Barker, A.T., Gelever, S.V., Lee, C.S. and 2 more (Osborn, S.V) (2021). Multilevel spectral coarsening for graph Laplacian problems with application to reservoir simulation. SIAM Journal on Scientific Computing, 43(4), A2737–A2765. 10.1137/19M1296343

Laguna, I., Rubio-González, C. (2021). Message from the Workshop Chairs. Proceedings of CORRECTNESS 2021: 5th International Workshop on Software Correctness for HPC Applications, Held in conjunction with SC 2021: The International Conference for High Performance Computing, Networking, Storage and Analysis, 10.1109/Correctness54621.2021.00004

Muralikrishnan, S., Cerfon, A.J., Frey, M. and 2 more (Ricketson, L.F) (2021). Sparse grid-based adaptive noise reduction strategy for particle-in-cell schemes. Journal of Computational Physics: X, 11. 10.1016/j.jcpx.2021.100094

Patki, T., Bertsch, A., Karlin, I. and 5 more (Ahn, D, Van Essen, B, Rountree, B, de Supinski, B) (2021). Monitoring large-scale supercomputers: A case study with the Lassen supercomputer. Proceedings - IEEE International Conference on Cluster Computing, ICCC, 2021-468-480. 10.1109/Cluster48925.2021.00057

Bynum, M.L., Hackebeil, G.A., Hart, W.E. and 5 more (Watson, J.P.) (2021). Pyomo models and components: An introduction. Springer Optimization and Its Applications, 6737–65. 10.1007/978-3-030-68928-5_4

Boehme, D., Aschwanden, P., Pearce, O. and 2 more (Legendre, M) (2021). Ubiquitous performance analysis. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 12728431–449. 10.1007/978-3-030-78713-4_23

Bynum, M.L., Hackebeil, G.A., Hart, W.E. and 5 more (Watson, J.P.) (2021). Introduction. Springer Optimization and Its Applications, 671–11. 10.1007/978-3-030-68928-5_1

Bhattacharya, S., Yu, W., Chowdhury, F.T. and 1 more (Mohror, K) (2021). O(1) communication for distributed SGD through two-level gradient averaging. Proceedings - IEEE International Conference on Cluster Computing, ICCC, 2021-332-343. 10.1109/Cluster48925.2021.00054

Bynum, M.L., Hackebeil, G.A., Hart, W.E. and 5 more (Watson, J.P.) (2021). Abstract models and their solution. Springer Optimization and Its Applications, 67137–168. 10.1007/978-3-030-68928-5_10

Bynum, M.L., Hackebeil, G.A., Hart, W.E. and 5 more (Watson, J.P.) (2021). Generalized disjunctive programming. Springer Optimization and Its Applications, 67171–180. 10.1007/978-3-030-68928-5_11

Rivera, D., Bernstein, J., Schmidt, K. and 5 more (Kupresanin, A) (2021). Bayesian calibration of strength model parameters from Taylor impact data. Computational Materials Science. 10.1016/j.commatsci.2021.110999

Aggarwal, I., Kashi, A., Nayak, P. and 3 more (Balos, C, Woodward, C) (2021). Batched sparse iterative solvers for computational chemistry simulations on GPUs. Proceedings of ScalA 2021: 12th Workshop on Latest Advances in Scalable Algorithms for Large-Scale Systems, Held in conjunction with SC 2021: The International Conference for High Performance Computing, Networking, Storage and Analysis, 35–43. 10.1109/ScalA54577.2021.00010

Muyskens, A., Schmidt, K., Nelms, M. and 4 more (Kupresanin, A) (2021). A practical extension of the recursive multi-fidelity model for the emulation of hole closure experiments. Statistical Analysis and Data Mining, 14(6), 636–646. 10.1002/sam.11513

Mohror, K., Cortes, T. (2021). Message from the Cluster 2021 General Co-Chairs. Proceedings - IEEE International Conference on Cluster Computing, ICCC, 2021–. 10.1109/Cluster48925.2021.00005

Mullowney, .P., Li, .R., Thomas, .S. and 5 more (...) (2021). Preparing an incompressible-flow fluid dynamics code for exascale-class wind energy simulations. International Conference for High Performance Computing, Networking, Storage and Analysis, SC. 10.1145/3458817.3476185

Brust, J.J., Di, Z.W., Leyffer, S. and 1 more (Petra, C.G) (2021). Compact representations of structured BFGS matrices. Computational Optimization and Applications, 80(1), 55–88. 10.1007/s10589-021-00297-0

Schordan, M., Beyer, D., Bojanova, I. (2021). Software verification tools (track introduction). Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 12479177–181. 10.1007/978-3-030-83723-5_12

Bynum, M.L., Hackebeil, G.A., Hart, W.E. and 5 more (Watson, J.P.) (2021). Scripting custom workflows. Springer Optimization and Its Applications, 6767–81. 10.1007/978-3-030-68928-5_5

Anirudh, R., Lohit, S., Turaga, P. (2021). Generative patch priors for practical compressive image recovery. Proceedings - 2021 IEEE Winter Conference on Applications of Computer Vision, WACV 2021, 2534–2544. 10.1109/WACV48630.2021.00258

Pazner, W., Haut, T. (2021). A short note on the accuracy of the discontinuous Galerkin method with reentrant faces. Journal of Computational Physics, 443. 10.1016/j.jcp.2021.110448

Bynum, M.L., Hackebeil, G.A., Hart, W.E. and 5 more (Watson, J.P.) (2021). Nonlinear programming with Pyomo. Springer Optimization and Its Applications, 6791–109. 10.1007/978-3-030-68928-5_7

Hong, W., Chakraborty, I. , Wang, H. and 1 more (...) (2021). Co-optimization scheme for hybrid electric vehicles powertrain and exhaust emission control system using future speed prediction. IEEE Transactions on Intelligent Vehicles. 10.1109/TIV.2021.3049296

Bynum, M.L., Hackebeil, G.A., Hart, W.E. and 5 more (Watson, J.P.) (2021). Interacting with solvers. Springer Optimization and Its Applications, 6783–87. 10.1007/978-3-030-68928-5_6

Ma, T., Mariscal, D., Anirudh, R. and 26 more (Bremer, T., Jacob, S., Kailkhura, B., Thiagarajan, J.J, Van Essen, B.) (2021). Accelerating the rate of discovery: Toward high-repetition-rate HED science. Plasma Physics and Controlled Fusion, 63(10). 10.1088/1361-6587/ac1f67

Doerfert, J., Georgakoudis, G. (2021). LLVM in parallel processing (LLPP2021). ACM International Conference Proceeding Series.

Shudler, S., Petruzza, S., Pascucci, V. and Bremer, P.-T. (2021). Portable and composable flow graphs for in situ analytics. Proceedings - 2021 IEEE 11th Symposium on Large Data Analysis and Visualization, LDAV 2021, 63–72 . 10.1109/LDAV53230.2021.00014

Pirkelbauer, P., Bromberger, S., Iwabuchi, K. and Pearce, R. (2021). Towards scalable data processing in Python with CLIPPy. Proceedings of IA3 2021: Workshop on Irregular Applications: Architectures and Algorithms, Held in conjunction with SC 2021: The International Conference for High Performance Computing, Networking, Storage and Analysis, 43–52. 10.1109/IA354616.2021.00013

Parasyris, K., Georgakoudis, G., Bautista-Gomez, L. and 1 more (Laguna, I.) (2021). Co-designing multi-level checkpoint restart for MPI applications. Proceedings - 21st IEEE/ACM International Symposium on Cluster, Cloud and Internet Computing, CCGrid 2021, 103–112. 10.1109/CCGrid51090.2021.00020

Kritsuk, A.G., Kotov, D., Sjögreen, B. and 1 more (...) (2021). High order nonlinear filter methods for subsonic turbulence simulation with stochastic forcing. Journal of Computational Physics, 431. 10.1016/j.jcp.2021.110118

Zhang, J., Kailkhura, B., Han, T.Y.-J. (2021). Leveraging uncertainty from deep learning for trustworthy material discovery workflows. ACS Omega, 6(19), 12711–1272. 10.1021/acsomega.1c00975

Hoang, D., Bhatia, H., Lindstrom, P. and 1 more (...) (2021). High-quality and low-memory-footprint progressive decoding of large-scale particle data. Proceedings - 2021 IEEE 11th Symposium on Large Data Analysis and Visualization, LDAV 2021, 32–42. 10.1109/LDAV53230.2021.00011

Ramadan, T., Islam, T.Z., Phelps, C. and 2 more (Thiagarajan, J.J.) (2021). Comparative code structure analysis using deep learning for performance prediction. Proceedings - 2021 IEEE International Symposium on Performance Analysis of Systems and Software, ISPASS 2021, 151–161. 10.1109/ISPASS51385.2021.00032

Bynum, M.L., Hackebeil, G.A., Hart, W.E. and 5 more (Watson, J.P.) (2021). Differential algebraic equations. Springer Optimization and Its Applications, 67181–189. 10.1007/978-3-030-68928-5_12

Bui, Q.M., Hamon, F.P., Castelletto, N. and 3 more (Osei-Kuffuor, D.) (2021). Multigrid reduction preconditioning framework for coupled processes in porous and fractured media. Computer Methods in Applied Mechanics and Engineering, 387. 10.1016/j.cma.2021.114111

Harrington, N., Bui, Q.M., Wei, Z. and 10 more (...) (2021). Passive longitudinal weight and cardiopulmonary monitoring in the home bed. Scientific Reports, 11(1). 10.1038/s41598-021-03105-1

Abdelfattah, A., Barra, V., Beams, N. and 24 more (Dobrev, V.,Kolev, T,Tomov, V.) (2021). GPU algorithms for efficient exascale discretizations. Parallel Computing, 108. 10.1016/j.parco.2021.102841

Kesavan, S., Bhatia, H., Bhatele, A. and 5 more (Brink, S.,Pearce, O., Gamblin, T.,Bremer, P.) (2021). Scalable comparative visualization of ensembles of call graphs. IEEE Transactions on Visualization and Computer Graphics. 10.1109/TVCG.2021.3129414

Tranquilli, P., Glandon, R., Sandu, A. (2021). Subspace adaptivity in Rosenbrock–Krylov methods for the time integration of initial value problems. Journal of Computational and Applied Mathematics, 385. 10.1016/j.cam.2020.113188

Falgout, R.D., Li, R., Sjögreen, B.. and 2 more (Yang, U.M.) (2021). Porting hypre to heterogeneous computer architectures: Strategies and experiences. Parallel Computing, 108. 10.1016/j.parco.2021.102840

Dobrev, V., Knupp, P., Kolev, T. and 2 more (Mittal, K., Tomov, V.) (2021). hr-Adaptivity for nonconforming high-order meshes with the target matrix optimization paradigm. Engineering with Computers. 10.1007/s00366-021-01407-6

Bhatia, H., Kirby, R.M., Pascucci, V. and 1 more (Bremer, P.-T.) (2021). Vector field decompositions using multiscale Poisson kernel. IEEE Transactions on Visualization and Computer Graphics, 27(9), 3781–3793. 10.1109/TVCG.2020.2984413

Petrides, S., Demkowicz, L. (2021). An adaptive multigrid solver for DPG methods with applications in linear acoustics and electromagnetics. Computers and Mathematics with Applications, 8712–26. 10.1016/j.camwa.2021.01.017

Lamar, K., Peterson, C., Dechev, D. and 3 more (Pearce, R., Pirkelbauer, P.) (2021). PMap: A non-volatile lock-free hash map with open addressing. Proceedings - 10th IEEE Non-Volatile Memory Systems and Applications Symposium, NVMSA 2021. 10.1109/NVMSA53655.2021.9628805

Sandu, A.,Tomov, V., Cervena, L. and 1 more (Kolev, T.) (2021). Conservative high-order time integration for Lagrangian hydrodynamics. SIAM Journal on Scientific Computing, 43(1), A221–A241. 10.1137/20M1314495

Wang, J.,Chiang, N.-Y., Petra, C.G. (2021). An asynchronous distributed-memory optimization solver for two-stage stochastic programming problems. Proceedings - 2021 20th International Symposium on Parallel and Distributed Computing, ISPDC 2021, 33–40. 10.1109/ISPDC52870.2021.9521613

Vogman, G.V., Hammer, J.H. (2021). High-fidelity kinetic modeling of instabilities and gyromotion physics in nonuniform low-beta plasmas. Physics of Plasmas, 28(6). 10.1063/5.0045983

Andrej, J., Grüne, L., Mechelli, L. and 3 more (...) (2021). Parallelized POD-based suboptimal economic model predictive control of a state-constrained Boussinesq approximation. Computers and Mathematics with Applications. 10.1016/j.camwa.2021.09.004

Bynum, M., Staid, A., Arguello, B. and 4 more (Watson, J.-P.) (2021). Proactive operations and investment planning via stochastic optimization to enhance power systems' extreme weather resilience. Journal of Infrastructure Systems, 27(2). 10.1061/(ASCE)IS.1943-555X.0000603

Miwa, S.,Laguna, I., Schulz, M. (2021). PredCom: A predictive approach to collecting approximated communication traces. IEEE Transactions on Parallel and Distributed Systems, 32(1), 45–58. 10.1109/TPDS.2020.3011121

Rao, S., Narayanaswamy, V., Esposito, M. and 2 more (Thiagarajan, J.J.) (2021). COVID-19 detection using cough sound analysis and deep learning algorithms. Intelligent Decision Technologies, 15(4), 655–665. 10.3233/IDT-210206

Falgout, R.D., Manteuffel, T.A., O’Neill, B. and 1 more (...) (2021). Multigrid reduction in time with Richardson extrapolation. Electronic Transactions on Numerical Analysis, 54210–233. 10.1553/ETNA_VOL54S210

Reza, T., Halawa, H., Ripeanu, M. and 2 more (Sanders, G., Pearce, R.A.) (2021). Scalable pattern matching in metadata graphs via constraint checking. ACM Transactions on Parallel Computing, 8(1). 10.1145/3434391

Bhardwaj, K., Verma, N., Trivedi, R. and 1 more (…) (2021). Effect of essential fatty acid blend on circadian variations of ambulatory blood pressure in patients with essential hypertension and coronary artery disease risk markers. Journal of Human Hypertension. 10.1038/s41371-021-00520-9

Steil, T., Sanders, G., Pearce, R. (2021). Towards distributed square counting in large graphs. 2021 IEEE High Performance Extreme Computing Conference, HPEC 2021. 10.1109/HPEC49654.2021.9622799

Guo, L., Li, D., Laguna, I. (2021). PARIS: Predicting application resilience using machine learning. Journal of Parallel and Distributed Computing, 152111–124. 10.1016/j.jpdc.2021.02.015

Heimann, M., Murić, G., Ferrara, E. (2021). Structural node embedding in signed social networks: Finding online misbehavior at multiple scales. Studies in Computational Intelligence, 9443–14. 10.1007/978-3-030-65351-4_1

Brink, S., Larsen, M., Childs, H. and 1 more (Rountree, B.) (2021). Evaluating adaptive and predictive power management strategies for optimizing visualization performance on supercomputers. Parallel Computing, 104–105. 10.1016/j.parco.2021.102782

Meng, R., Soper, B., Lee, H.K.H. and 3 more (...) (2021). Nonstationary multivariate Gaussian processes for electronic health records. Journal of Biomedical Informatics, 117. 10.1016/j.jbi.2021.103698

Hong, K.N., Brambatti, M., John, S. and 4 more (...) (2021). Recommendations and guidance on the diagnosis and management of Danon disease. Expert Opinion on Orphan Drugs ,9(1) 25–33. 10.1080/21678707.2021.1882994

Taherin, A., Patel, T., Georgakoudis, G. and 2 more (Laguna, I.) (2021). Examining failures and repairs on supercomputers with multi-GPU compute nodes. Proceedings - 51st Annual IEEE/IFIP International Conference on Dependable Systems and Networks, DSN 2021, 305–313. 10.1109/DSN48987.2021.00043

Jayatilaka, T., Ueno, H., Georgakoudis, G. and 2 more (...) (2021). Towards compile-time-reducing compiler optimization selection via machine learning. ACM International Conference Proceeding Series. 10.1145/3458744.3473355

Parasyris, K., Georgakoudis, G., Menon, H. and 4 more (Diffenderfer, J., Laguna, I., Osei-Kuffuor, D., Schordan, M.) (2021). HPAC: Evaluating approximate computing techniques on HPC OpenMP applications. International Conference for High Performance Computing, Networking, Storage and Analysis, SC. 10.1145/3458817.3476216

Li, L., Weber, M., Xu, X. and 5 more (Kailkhura, B.) (2021). TSS: Transformation-specific smoothing for robustness certification. Proceedings of the ACM Conference on Computer and Communications Security, 535–557. 10.1145/3460120.3485258

Osborn, S. (2021). Replicated computational results (RCR) report for "Adaptive Precision Block-Jacobi for High Performance Preconditioning in the Ginkgo Linear Algebra Software.” ACM Transactions on Mathematical Software, 47(2). 10.1145/3446000

Bhatia, H., Petruzza, S.N., Anirudh, R. and 4 more (Bremer, P.-T.) (2021). Data-driven estimation of temporal-sampling errors in unsteady flows. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 13017235–248. 10.1007/978-3-030-90439-5_19

Islam, T.Z., Liang, P.W., Sweeney, F. and 4 more (Thiagarajan, J.J.) (2021). College life is hard! Shedding light on stress prediction for autistic college students using data-driven analysis. Proceedings - 2021 IEEE 45th Annual Computers, Software, and Applications Conference, COMPSAC 2021, 428–437. 10.1109/COMPSAC51774.2021.00066

Glatt, R., Silva, F.L.D., Soper, B. and 3 more (...) (2021). Collaborative energy demand response with decentralized actor and centralized critic. BuildSys 2021 - Proceedings of the 2021 ACM International Conference on Systems for Energy-Efficient Built Environments, 333–337. 10.1145/3486611.3488732

Tumurbaatar, A., Sottile, M.J. (2021). Algebraic algorithms for betweenness and percolation centrality. Journal of Graph Algorithms and Applications, 25(1), 241–261. 10.7155/JGAA.00558

Liao, C., Lin, P.-H., Verma, G. and 4 more (...) (2021). HPC Ontology: Towards a unified ontology for managing training datasets and AI models for high-performance computing. Proceedings of MLHPC 2021: Workshop on Machine Learning in High Performance Computing Environments, Held in conjunction with SC 2021: The International Conference for High Performance Computing, Networking, Storage and Analysis, 69–80. 10.1109/MLHPC54614.2021.00012

Verma, G., Emani, M., Liao, C. and 4 more (Vanderbruggen, T.) (2021). HPCFAIR: Enabling FAIR AI for HPC applications. Proceedings of MLHPC 2021: Workshop on Machine Learning in High Performance Computing Environments, Held in conjunction with SC 2021: The International Conference for High Performance Computing, Networking, Storage and Analysis, 58–68. 10.1109/MLHPC54614.2021.00011

Shi, J., Li, R., Xi, Y. and 2 more (...) (2021). Planetary normal mode computation: Parallel algorithms, performance, and reproducibility. IEEE Transactions on Parallel and Distributed Systems, 32(11), 2609–2622. 10.1109/TPDS.2021.3050448

Chen, C., Kailkhura, B., Goldhahn, R. and 1 more (...) (2021). Certifiably robust federated adversarial learning via randomized smoothing. Proceedings - 2021 IEEE 18th International Conference on Mobile Ad Hoc and Smart Systems, MASS 2021, 173–179. 10.1109/MASS52906.2021.00032

Nguyen, S., Chan, R., Cadena, J. and 10 more (Soper, B.) (2021). Budget constrained machine learning for early prediction of adverse outcomes for COVID-19 patients. Scientific Reports, 11(1). 10.1038/s41598-021-98071-z

Atkins, Z.R., Vogl, C.J., Madduri, A. and 3 more (Meri, D.) (2021). Distribution system voltage prediction from smart inverters using decentralized regression. IEEE Power and Energy Society General Meeting, 2021–. 10.1109/PESGM46819.2021.9637900

Neth, B., Scogland, T.R.W., Duran, A. and 1 more (de Supinski, B.R.) (2021). Beyond explicit transfers: Shared and managed memory in OpenMP. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 12870183–194. 10.1007/978-3-030-85262-7_13

Hong, K.N., Battikha, C., John, S. and 16 more (...) (2021). Cardiac transplantation in Danon disease. Journal of Cardiac Failure. 10.1016/j.cardfail.2021.11.007

Tran, K., Sakla, W., Krim, H. (2021). Generative information fusion. ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing – Proceedings, 2021-3990-3994. 10.1109/ICASSP39728.2021.9414284

Bhatia, H., Natale, F.D., Moon, J.Y. and 15 more (Bremer, P.-T., Herbein, S, Ahn, D.H., Oppelstrup, T.) (2021). Generalizable coordination of large multiscale workflows: Challenges and learnings at scale. International Conference for High Performance Computing, Networking, Storage and Analysis, SC. 10.1145/3458817.3476210

Mallick, A., Dwivedi, C., Kailkhura, B. and 2 more (...) (2021). Deep kernels with probabilistic embeddings for small-data learning. 37th Conference on Uncertainty in Artificial Intelligence, UAI 2021, 918–928

Heimann, M., Chen, X., Vahedian, F. and 1 more (...) (2021). Refining network alignment to improve matched neighborhood consistency. SIAM International Conference on Data Mining, SDM 2021, 172–180

Narayanaswamy, V.S., Thiagarajan, J.J., Spanias, A. (2021). On the design of deep priors for unsupervised audio restoration. Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH, 42858–2862. 10.21437/Interspeech.2021-1890

Bynum, M.L., Hackebeil, G.A., Hart, W.E. and 5 more (Watson, J.-P.) (2021). Pyomo overview. Springer Optimization and Its Applications, 6725–36. 10.1007/978-3-030-68928-5_3

Eberius, D., Boehme, D., Pearce, O. (2021). Did the GPU obfuscate the load imbalance in my MPI simulation? Proceedings of HiPar 2021: 2nd Workshop on Hierarchical Parallelism for Exascale Computing, Held in conjunction with SC 2021: The International Conference for High Performance Computing, Networking, Storage and Analysis, 20–29. 10.1109/HiPar54615.2021.00008

Youssef, K., Iwabuchi, K., Feng, W.-C. and 1 more (Pearce, R.) (2021). Privateer: Multi-versioned memory-mapped data stores for high-performance data science. 2021 IEEE High Performance Extreme Computing Conference, HPEC 2021. 10.1109/HPEC49654.2021.9622826

Gopalakrishnan, G., Laguna, I., Li, A. and 3 more (...) (2021). Guarding numerics amidst rising heterogeneity. Proceedings of CORRECTNESS 2021: 5th International Workshop on Software Correctness for HPC Applications, Held in conjunction with SC 2021: The International Conference for High Performance Computing, Networking, Storage and Analysis, 9–15. 10.1109/Correctness54621.2021.00007

Wilson, D.C., Jana, S., Marathe, A. and 12 more (Brink, S.) (2021). Introducing application awareness into a unified power management stack. Proceedings - 2021 IEEE 35th International Parallel and Distributed Processing Symposium, IPDPS 2021, 320–329. 10.1109/IPDPS49936.2021.00040

McDonald, T., Shrestha, R., Yi, X. and 6 more (Bhatia, H., Bremer, P.-T.) (2021). Leveraging topological events in tracking graphs for understanding particle diffusion. Computer Graphics Forum, 40(3), 251–262. 10.1111/cgf.14304

Neth, B., Scogland, T.R.W., de Supinski, B.R. and 1 more (...) (2021). Inter-loop optimizations in RAJA using loop chains. Proceedings of the International Conference on Supercomputing, 1–12. 10.1145/3447818.3461665

Salari, K., Ortega, J.M. (2021). Aerodynamic integration produces a vehicle shape with a negative drag coefficient. Proceedings of the National Academy of Sciences of the United States of America, 118(27). 10.1073/pnas.2106406118

Bynum, M.L., Hackebeil, G.A., Hart, W.E. and 5 more (Watson, J.-P.) (2021). Mathematical programs with equilibrium constraints. Springer Optimization and Its Applications, 67191–202. 10.1007/978-3-030-68928-5_13

Bynum, M.L., Hackebeil, G.A., Hart, W.E. and 5 more (Watson, J.-P.) (2021). Performance: Model construction and solver interfaces. Springer Optimization and Its Applications, 67123–135. 10.1007/978-3-030-68928-5_9

Bynum, M.L., Hackebeil, G.A., Hart, W.E. and 5 more (Watson, J.-P.) (2021). A brief Python tutorial. Springer Optimization and Its Applications, 67203–216. 10.1007/978-3-030-68928-5_14

Settlemyer, B., Amvrosiadis, G., Carns, P. and 3 more (Mohror, K.) (2021). It's time to talk about HPC storage: perspectives on the past and future. Computing in Science and Engineering, 23(6), 63–68. 10.1109/MCSE.2021.3117353

Wyatt, M.R., Yamamoto, V., Tosi, Z. and 2 more (…) (2021). Is disaggregation possible for HPC cognitive simulation? Proceedings of MLHPC 2021: Workshop on Machine Learning in High Performance Computing Environments, Held in conjunction with SC 2021: The International Conference for High Performance Computing, Networking, Storage and Analysis, 94–105. 10.1109/MLHPC54614.2021.00014

Yeom, J.-S., Georgouli, K., Blake, R. and 1 more (...) (2021). Towards dynamic simulation of a whole cell model. Proceedings of the 12th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics, BCB 2021. 10.1145/3459930.3471161

Mackay, S., Ponce, C., Osborn, S. and 1 more (...) (2021). Finding diverse ways to improve algebraic connectivity through multi-start optimization. Journal of Complex Networks, 9(1), 1–26. 10.1093/comnet/cnab005

Greenberg, H.J., Watson, J.-P., Woodruff, D.L. (2021). Parametric stochastic programming with one chance constraint: Gaining insights from response space analysis. International Series in Operations Research and Management Science, 29599–124. 10.1007/978-3-030-56429-2_6

Bui, Q.M., Hong, K.N., Kraushaar, M. and 10 more (...) (2021). Myocardial strain and association with clinical outcomes in Danon disease: A model for monitoring progression of genetic cardiomyopathies. Journal of the American Heart Association, 10(23). 10.1161/JAHA.121.022544

Bynum, M.L., Hackebeil, G.A., Hart, W.E. and 5 more (Watson, J.-P.) (2021). Structured modeling with blocks. Springer Optimization and Its Applications, 67111–122. 10.1007/978-3-030-68928-5_8

Bynum, M.L., Hackebeil, G.A., Hart, W.E. and 5 more (Watson, J.-P.) (2021). Mathematical modeling and optimization. Springer Optimization and Its Applications, 6715–24. 10.1007/978-3-030-68928-5_2

Mattson, T.G., Anderson, T.A., Georgakoudis, G. and 2 more (...) (2021). PyOMP: multithreaded parallel programming in Python. Computing in Science and Engineering, 23(6), 77–80. 10.1109/MCSE.2021.3128806

Wood, C., Georgakoudis, G., Beckingsale, D. and 5 more (Gamblin, T.) (2021). Artemis: Automatic runtime tuning of parallel execution parameters using machine learning. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 12728453–472. 10.1007/978-3-030-78713-4_24

Landen, O.L., Lindl, J.D., Haan, S.W. and 18 more (...) (2021). Erratum: Fuel convergence sensitivity in indirect drive implosions. Physics of Plasmas, 28(5). 10.1063/5.0055406

Kailkhura, B., Chen, P.-Y., Lin, X. and 1 more (...) (2021). Editorial: Safe and trustworthy machine learning. Frontiers in Big Data, 4. 10.3389/fdata.2021.731605

Zeno, G., La Fond, T., Neville, J. (2021). DYMOND: Dynamic motif-nodes network generative model. The Web Conference 2021 - Proceedings of the World Wide Web Conference, WWW 2021, 718–729. 10.1145/3442381.3450102

Bhatele, A., Boehme, D., Danalis, A. (2021). Message from the ProTools 2021 Workshop Chairs. Proceedings of ProTools 2021: Workshop on Programming and Performance Visualization Tools, Held in conjunction with SC 2021: The International Conference for High Performance Computing, Networking, Storage and Analysis. 10.1109/ProTools54808.2021.00004

Song, H., Thiagarajan, J.J., Kailkhura, B. (2021). Preventing failures by dataset shift detection in safety-critical graph applications. Frontiers in Artificial Intelligence, 4. 10.3389/frai.2021.589632

Scully-Allison, C.F., Liem, R., Solorzano, A.V. and 5 more (Katz, M., Pearce, O.) (2021). Panel discussion on the future of performance analysis and engineering. PERMAVOST 2021 - Proceedings of the 2021 Performance EngineeRing, Modelling, Analysis, and VisualizatiOn Strategy, 27–28. 10.1145/3452412.3464484