Sasha Ames, Jonathan E. Allen, David A. Hysom, G. Scott Lloyd and Maya B. Gokhale. "Design and Optimization of a Metagenomics Analysis Workflow for NVRAM." 13th IEEE International Workshop on High Performance Computational Biology. To appear.
Sasha K. Ames, David A. Hysom, Shea N. Gardner, G. Scott Lloyd, Maya B. Gokhale, Jonathan E. Allen. "Scalable metagenomic taxonomy classification usng a reference genome database.” Bioinformatics, July 2013.
Brian Van Essen, Henry Hsieh, Sasha Ames, Maya Gokhale, “DI-MMAP: A High Performance Memory Map Runtime for Data-Intensive Applications,” Data intensive scalable computing systems workshop at SC12, November 2012.